SMTL ID : 5jrc.1

Crystal structure of NeC3PO in complex with ssRNA.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-4-4-mer

Ligands

10 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: E.119, E.155 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.119, A:E.155, H2O.3 CA.2: 2 residues within 4Å: Chain B: E.119, E.155 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.119, B:E.119, H2O.5 CA.3: 6 residues within 4Å: Chain C: E.116, E.119, D.151 Chain E: A.4, A.5 Ligands: CA.4 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.116, C:E.116, C:E.119, C:D.151, H2O.6 CA.4: 4 residues within 4Å: Chain C: E.119, E.155 Chain E: A.5 Ligands: CA.3 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:E.119, C:E.155, H2O.6, H2O.9, H2O.9 CA.5: 2 residues within 4Å: Chain D: E.119, E.155 5 PLIP interactions: 2 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:E.119, D:E.155, H2O.7, H2O.8, H2O.8 CA.6: 2 residues within 4Å: Chain F: E.119, E.155 3 PLIP interactions: 2 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:E.119, F:E.155, H2O.11 CA.7: 2 residues within 4Å: Chain G: E.119, E.155 3 PLIP interactions: 2 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:E.119, G:E.119, H2O.14 CA.8: 6 residues within 4Å: Chain H: E.116, E.119, D.151 Chain J: A.4, A.5 Ligands: CA.9 5 PLIP interactions: 4 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:E.116, H:E.116, H:E.119, H:D.151, H2O.15 CA.9: 4 residues within 4Å: Chain H: E.119, E.155 Chain J: A.5 Ligands: CA.8 5 PLIP interactions: 2 interactions with chain H, 3 Ligand-Water interactions Metal complexes: H:E.119, H:E.155, H2O.15, H2O.17, H2O.17 CA.10: 2 residues within 4Å: Chain I: E.119, E.155 5 PLIP interactions: 2 interactions with chain I, 3 Ligand-Water interactions Metal complexes: I:E.119, I:E.155, H2O.15, H2O.16, H2O.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, J. et al., Structural basis for single-stranded RNA recognition and cleavage by C3PO. Nucleic Acids Res. (2016)

Release Date

2016-09-28

Peptides

NEQ131: ACFH
NEQ131: BDGI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

F
A

H
C

B
B

D
D

G
B

I
D

NEQ131

NEQ131

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