SMTL ID : 5jrz.1

Structure of the NS3 helicase from the French Polynesia strain of the Zika virus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

monomer

Ligands

6 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 5 residues within 4Å: Chain A: R.155, T.281, H.282, A.310, D.313 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:T.281, A:A.310 Hydrogen bonds: A:H.282 Water bridges: A:K.346, A:K.346 Salt bridges: A:R.155, A:H.282, A:K.346 ACT.2: 4 residues within 4Å: Chain A: R.74, Y.75, M.76, H.84 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.74 Hydrogen bonds: A:Y.75 Salt bridges: A:R.74 ACT.3: 4 residues within 4Å: Chain A: V.215, E.226, K.229, Q.233 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:K.229 Hydrogen bonds: A:V.215 Water bridges: A:V.215, A:E.226, A:E.226 Salt bridges: A:K.229 ACT.4: 5 residues within 4Å: Chain A: R.58, M.76, T.77, T.78, C.94 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.77, A:T.77 Salt bridges: A:R.58 ACT.5: 6 residues within 4Å: Chain A: V.198, S.219, R.220, T.241, D.242, I.243 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:R.220, A:T.241 Hydrogen bonds: A:R.220, A:T.241 Water bridges: A:V.198, A:S.219 ACT.6: 5 residues within 4Å: Chain A: W.413, T.414, R.415, H.416, G.417 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.448

1 x POP: PYROPHOSPHATE 2-(Non-covalent)

POP.7: 10 residues within 4Å: Chain A: H.27, P.28, G.29, A.30, G.31, K.32, T.33, N.249, R.291, R.294 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:G.29, A:G.29, A:A.30, A:G.31, A:K.32, A:T.33, A:N.249 Water bridges: A:Q.287, A:R.291, A:R.291, A:R.294 Salt bridges: A:K.32, A:K.32, A:R.291, A:R.294, A:R.294

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jain, R. et al., Structure of the NS3 helicase from Zika virus. Nat.Struct.Mol.Biol. (2016)

Release Date

2016-07-06

Peptides

Helicase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Helicase

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