SMTL ID : 5jst.1

MBP fused MDV1 coiled coil

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 15 residues within 4Å: Chain A: D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341, R.345 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.16, A:K.16, A:E.112 Water bridges: A:A.64, A:A.64 GLC-GLC.2: 14 residues within 4Å: Chain B: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, W.341 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:W.63, B:R.67, B:Y.156

5 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 2 residues within 4Å: Chain A: E.5, D.56 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.56 ACT.4: 4 residues within 4Å: Chain A: D.185, N.186, A.187, K.190 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.187 Salt bridges: A:K.190 ACT.5: 5 residues within 4Å: Chain A: Y.91, F.93, E.309, M.322 Ligands: GOL.7 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.93 ACT.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ACT.8: 2 residues within 4Å: Chain B: A.191, K.252 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.252

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 2 residues within 4Å: Chain A: F.93 Ligands: ACT.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, B.W. et al., ACCORD: an assessment tool to determine the orientation of homodimeric coiled-coils. Sci Rep (2017)

Release Date

2017-03-22

Peptides

Maltose-binding periplasmic protein,Mitochondrial division protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Maltose-binding periplasmic protein,Mitochondrial division protein 1