SMTL ID : 5juw.1

complex of Dot1l with SS148

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

monomer

Ligands

22 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 2 residues within 4Å: Chain A: R.204, H.214 Ligand excluded by PLIP UNX.2: 2 residues within 4Å: Chain A: Y.184, R.232 Ligand excluded by PLIP UNX.3: 1 residues within 4Å: Chain A: H.110 Ligand excluded by PLIP UNX.4: 1 residues within 4Å: Chain A: R.102 Ligand excluded by PLIP UNX.5: 2 residues within 4Å: Chain A: H.118, E.202 Ligand excluded by PLIP UNX.6: 4 residues within 4Å: Chain A: R.230, Q.253, E.256, R.257 Ligand excluded by PLIP UNX.7: 4 residues within 4Å: Chain A: I.152, R.266, L.315 Ligands: UNX.18 Ligand excluded by PLIP UNX.8: 4 residues within 4Å: Chain A: P.103, S.104, L.107, K.212 Ligand excluded by PLIP UNX.9: 3 residues within 4Å: Chain A: S.68, F.69, E.70 Ligand excluded by PLIP UNX.10: 2 residues within 4Å: Chain A: S.104, T.105 Ligand excluded by PLIP UNX.11: 2 residues within 4Å: Chain A: G.138, E.139 Ligand excluded by PLIP UNX.12: 3 residues within 4Å: Chain A: R.204, E.216, Y.217 Ligand excluded by PLIP UNX.13: 2 residues within 4Å: Chain A: S.226, E.227 Ligand excluded by PLIP UNX.14: 2 residues within 4Å: Chain A: L.112, Q.113 Ligand excluded by PLIP UNX.15: 2 residues within 4Å: Chain A: P.134, E.135 Ligand excluded by PLIP UNX.16: 2 residues within 4Å: Chain A: H.252, K.255 Ligand excluded by PLIP UNX.17: 3 residues within 4Å: Chain A: Y.129, E.130, E.135 Ligand excluded by PLIP UNX.18: 4 residues within 4Å: Chain A: R.266, R.293, T.317 Ligands: UNX.7 Ligand excluded by PLIP UNX.19: 2 residues within 4Å: Chain A: G.264, R.266 Ligand excluded by PLIP UNX.20: 2 residues within 4Å: Chain A: S.141, F.142 Ligand excluded by PLIP UNX.21: 2 residues within 4Å: Chain A: N.281, S.282 Ligand excluded by PLIP UNX.22: 1 residues within 4Å: Chain A: R.81 Ligand excluded by PLIP

1 x 6NR: (2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-(4-azanyl-5-cyano-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid(Non-covalent)

6NR.23: 22 residues within 4Å: Chain A: P.134, V.136, Y.137, G.138, E.139, T.140, D.162, G.164, S.165, G.166, Q.169, V.170, E.187, K.188, A.189, G.222, D.223, F.224, F.240, N.242, F.246, V.250 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.224 Hydrogen bonds: A:T.140, A:T.140, A:D.162, A:Q.169, A:K.188, A:D.223, A:D.223, A:F.224, A:N.242 Water bridges: A:E.135, A:D.162, A:N.242 pi-Stacking: A:F.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, W. et al., Complex of Dot1l with SS148. To Be Published

Release Date

2016-06-22

Peptides

Histone-lysine N-methyltransferase, H3 lysine-79 specific: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase, H3 lysine-79 specific

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