SMTL ID : 5jva.1

1.95 angstrom crystal structure of TAGRFP-T

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-tetramer

Ligands

4 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.1: 10 residues within 4Å: Chain A: Y.192, R.218, C.220, D.221, L.222 Chain B: A.140, N.141, T.142, D.194, H.195 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.218, A:R.218 BME.3: 7 residues within 4Å: Chain A: N.141, T.142, D.194, H.195 Chain B: Y.192, R.218, C.220 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.218, B:R.218, A:T.142 BME.4: 7 residues within 4Å: Chain C: Y.192, R.218, C.220 Chain D: A.140, N.141, T.142, D.194 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:R.218, C:R.218, D:T.142 BME.6: 6 residues within 4Å: Chain C: N.141, T.142, D.194 Chain D: Y.192, R.218, C.220 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:R.218, D:R.218

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: Y.219, C.220 Chain B: R.196 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:C.220 Water bridges: A:Y.192, A:Y.192 Salt bridges: B:R.196 SO4.5: 3 residues within 4Å: Chain C: Y.219, C.220 Chain D: R.196 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain C Salt bridges: D:R.196 Hydrogen bonds: C:C.220, C:C.220

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, R. et al., The crystal structure of red fluorescent protein TagRFP-T reveals the mechanism of its superior photostability. Biochem. Biophys. Res. Commun. (2016)

Release Date

2017-05-17

Peptides

TagRFP-T: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

TagRFP-T