- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.58 Å
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 1 x 6O1: Evernimicin(Non-covalent)
- 123 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
MG.2: 2 residues within 4Å:- Chain A: G.2698, G.2699
No protein-ligand interaction detected (PLIP)MG.3: 3 residues within 4Å:- Chain A: C.583, U.585, G.586
No protein-ligand interaction detected (PLIP)MG.4: 2 residues within 4Å:- Chain A: G.1992, G.1993
No protein-ligand interaction detected (PLIP)MG.5: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.6: 2 residues within 4Å:- Chain A: C.1765, A.1777
No protein-ligand interaction detected (PLIP)MG.7: 2 residues within 4Å:- Chain A: G.844, A.956
No protein-ligand interaction detected (PLIP)MG.8: 1 residues within 4Å:- Chain A: A.1693
No protein-ligand interaction detected (PLIP)MG.9: 3 residues within 4Å:- Chain A: G.1337, U.1339, C.1340
No protein-ligand interaction detected (PLIP)MG.10: 2 residues within 4Å:- Chain A: A.1681, G.1975
No protein-ligand interaction detected (PLIP)MG.11: 3 residues within 4Å:- Chain A: G.687, A.815, U.816
No protein-ligand interaction detected (PLIP)MG.12: 3 residues within 4Å:- Chain A: G.2661, A.2701, G.2702
No protein-ligand interaction detected (PLIP)MG.13: 1 residues within 4Å:- Chain A: A.2684
No protein-ligand interaction detected (PLIP)MG.14: 4 residues within 4Å:- Chain A: G.540, C.541, G.2018, C.2019
No protein-ligand interaction detected (PLIP)MG.15: 2 residues within 4Å:- Chain A: U.800, C.803
No protein-ligand interaction detected (PLIP)MG.16: 3 residues within 4Å:- Chain A: G.579, A.834, A.984
No protein-ligand interaction detected (PLIP)MG.17: 3 residues within 4Å:- Chain A: U.753, A.1774, A.1775
No protein-ligand interaction detected (PLIP)MG.18: 3 residues within 4Å:- Chain A: U.823, U.824, G.1266
No protein-ligand interaction detected (PLIP)MG.19: 4 residues within 4Å:- Chain A: A.1771, C.1772, C.1773, A.1774
No protein-ligand interaction detected (PLIP)MG.20: 1 residues within 4Å:- Chain A: G.2852
No protein-ligand interaction detected (PLIP)MG.21: 3 residues within 4Å:- Chain A: G.2015, A.2432, C.2478
No protein-ligand interaction detected (PLIP)MG.22: 2 residues within 4Å:- Chain A: A.587, U.2000
No protein-ligand interaction detected (PLIP)MG.23: 5 residues within 4Å:- Chain A: C.1310, C.2689, A.2690, C.2691, A.2692
No protein-ligand interaction detected (PLIP)MG.24: 3 residues within 4Å:- Chain A: A.2690, A.2692, G.2694
No protein-ligand interaction detected (PLIP)MG.25: 3 residues within 4Å:- Chain A: G.2007, G.2018, G.2021
No protein-ligand interaction detected (PLIP)MG.26: 3 residues within 4Å:- Chain A: A.763, A.764, A.1630
No protein-ligand interaction detected (PLIP)MG.27: 1 residues within 4Å:- Chain A: U.835
No protein-ligand interaction detected (PLIP)MG.28: 2 residues within 4Å:- Chain A: U.1467, A.1468
No protein-ligand interaction detected (PLIP)MG.29: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.30: 2 residues within 4Å:- Chain A: U.575, A.576
No protein-ligand interaction detected (PLIP)MG.31: 3 residues within 4Å:- Chain A: G.2036, G.2555, A.2556
No protein-ligand interaction detected (PLIP)MG.32: 3 residues within 4Å:- Chain A: A.2497, C.2519, A.2520
No protein-ligand interaction detected (PLIP)MG.33: 1 residues within 4Å:- Chain A: G.1273
No protein-ligand interaction detected (PLIP)MG.34: 2 residues within 4Å:- Chain A: A.2566, G.2567
No protein-ligand interaction detected (PLIP)MG.35: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.36: 4 residues within 4Å:- Chain A: U.2057, G.2218, U.2219
- Chain C: P.228
No protein-ligand interaction detected (PLIP)MG.37: 3 residues within 4Å:- Chain A: G.1309, U.1656, G.2688
No protein-ligand interaction detected (PLIP)MG.38: 2 residues within 4Å:- Chain A: A.1681, A.1682
No protein-ligand interaction detected (PLIP)MG.39: 4 residues within 4Å:- Chain A: U.1280, A.1281, C.1989, A.2031
No protein-ligand interaction detected (PLIP)MG.40: 1 residues within 4Å:- Chain A: A.1643
No protein-ligand interaction detected (PLIP)MG.41: 2 residues within 4Å:- Chain A: G.844, A.956
No protein-ligand interaction detected (PLIP)MG.42: 5 residues within 4Å:- Chain A: C.1283, G.1284, A.1285, G.1664, C.1665
No protein-ligand interaction detected (PLIP)MG.43: 3 residues within 4Å:- Chain A: G.2039, A.2040, A.2041
No protein-ligand interaction detected (PLIP)MG.44: 3 residues within 4Å:- Chain A: C.1687, U.1688, G.2529
No protein-ligand interaction detected (PLIP)MG.45: 3 residues within 4Å:- Chain A: G.1887, G.2574, G.2576
No protein-ligand interaction detected (PLIP)MG.46: 4 residues within 4Å:- Chain A: C.2486, C.2552, G.2553, C.2554
No protein-ligand interaction detected (PLIP)MG.47: 2 residues within 4Å:- Chain A: U.29, A.459
No protein-ligand interaction detected (PLIP)MG.48: 2 residues within 4Å:- Chain A: A.1282, A.1988
No protein-ligand interaction detected (PLIP)MG.49: 1 residues within 4Å:- Chain A: U.1280
No protein-ligand interaction detected (PLIP)MG.50: 1 residues within 4Å:- Chain A: G.2656
No protein-ligand interaction detected (PLIP)MG.51: 2 residues within 4Å:- Chain A: U.585, A.2482
No protein-ligand interaction detected (PLIP)MG.52: 4 residues within 4Å:- Chain A: C.169, U.170, A.176, U.2222
No protein-ligand interaction detected (PLIP)MG.53: 3 residues within 4Å:- Chain A: G.2044, C.2480, G.2481
No protein-ligand interaction detected (PLIP)MG.54: 2 residues within 4Å:- Chain A: A.797, G.2567
No protein-ligand interaction detected (PLIP)MG.55: 3 residues within 4Å:- Chain A: C.1310, C.1311, U.1656
No protein-ligand interaction detected (PLIP)MG.56: 2 residues within 4Å:- Chain A: G.1652, C.1653
No protein-ligand interaction detected (PLIP)MG.57: 5 residues within 4Å:- Chain A: A.743, C.744, A.774, U.775, G.776
No protein-ligand interaction detected (PLIP)MG.58: 2 residues within 4Å:- Chain A: G.798, G.805
No protein-ligand interaction detected (PLIP)MG.59: 2 residues within 4Å:- Chain A: U.2057, U.2222
No protein-ligand interaction detected (PLIP)MG.60: 2 residues within 4Å:- Chain A: G.2665, U.2666
No protein-ligand interaction detected (PLIP)MG.61: 3 residues within 4Å:- Chain A: A.2409, U.2410, A.2411
No protein-ligand interaction detected (PLIP)MG.62: 2 residues within 4Å:- Chain A: U.2024, A.2025
No protein-ligand interaction detected (PLIP)MG.63: 1 residues within 4Å:- Chain A: C.226
No protein-ligand interaction detected (PLIP)MG.64: 2 residues within 4Å:- Chain A: C.982, G.985
No protein-ligand interaction detected (PLIP)MG.65: 2 residues within 4Å:- Chain A: G.1767, A.1964
No protein-ligand interaction detected (PLIP)MG.66: 1 residues within 4Å:- Chain A: C.2008
No protein-ligand interaction detected (PLIP)MG.67: 3 residues within 4Å:- Chain A: A.168, C.169, A.813
No protein-ligand interaction detected (PLIP)MG.68: 4 residues within 4Å:- Chain A: G.2560, G.2561, G.2562, U.2563
No protein-ligand interaction detected (PLIP)MG.69: 5 residues within 4Å:- Chain A: A.796, A.797, A.2568
- Chain C: A.225, N.227
No protein-ligand interaction detected (PLIP)MG.70: 3 residues within 4Å:- Chain A: C.830, G.831, G.1201
No protein-ligand interaction detected (PLIP)MG.71: 1 residues within 4Å:- Chain A: G.2847
No protein-ligand interaction detected (PLIP)MG.72: 2 residues within 4Å:- Chain A: C.583, G.2018
No protein-ligand interaction detected (PLIP)MG.73: 3 residues within 4Å:- Chain A: C.959, U.973, U.974
No protein-ligand interaction detected (PLIP)MG.74: 2 residues within 4Å:- Chain A: A.2034, G.2557
No protein-ligand interaction detected (PLIP)MG.75: 3 residues within 4Å:- Chain A: A.461, G.462, G.464
No protein-ligand interaction detected (PLIP)MG.76: 3 residues within 4Å:- Chain A: C.520, U.521, G.522
No protein-ligand interaction detected (PLIP)MG.77: 1 residues within 4Å:- Chain A: U.2249
No protein-ligand interaction detected (PLIP)MG.78: 3 residues within 4Å:- Chain A: G.462, C.465, A.466
No protein-ligand interaction detected (PLIP)MG.79: 2 residues within 4Å:- Chain A: A.2618, G.2619
No protein-ligand interaction detected (PLIP)MG.80: 2 residues within 4Å:- Chain A: U.577, A.984
No protein-ligand interaction detected (PLIP)MG.81: 4 residues within 4Å:- Chain 1: R.42
- Chain A: G.2328, C.2396, A.2397
No protein-ligand interaction detected (PLIP)MG.82: 2 residues within 4Å:- Chain A: C.1633, G.1635
No protein-ligand interaction detected (PLIP)MG.83: 4 residues within 4Å:- Chain A: U.839, C.2406, G.2407, G.2408
No protein-ligand interaction detected (PLIP)MG.84: 1 residues within 4Å:- Chain A: U.974
No protein-ligand interaction detected (PLIP)MG.85: 4 residues within 4Å:- Chain A: A.834, G.955, A.956, G.957
No protein-ligand interaction detected (PLIP)MG.86: 2 residues within 4Å:- Chain A: A.536, C.537
No protein-ligand interaction detected (PLIP)MG.87: 2 residues within 4Å:- Chain A: G.699, C.700
No protein-ligand interaction detected (PLIP)MG.88: 1 residues within 4Å:- Chain A: A.992
No protein-ligand interaction detected (PLIP)MG.89: 4 residues within 4Å:- Chain A: G.171, A.172, A.174, C.175
No protein-ligand interaction detected (PLIP)MG.90: 3 residues within 4Å:- Chain A: A.2432, U.2471, C.2552
No protein-ligand interaction detected (PLIP)MG.91: 2 residues within 4Å:- Chain A: G.1168, C.1169
No protein-ligand interaction detected (PLIP)MG.92: 3 residues within 4Å:- Chain A: G.2665, U.2666, U.2700
No protein-ligand interaction detected (PLIP)MG.93: 4 residues within 4Å:- Chain A: U.578, G.579, A.2427, C.2478
No protein-ligand interaction detected (PLIP)MG.94: 3 residues within 4Å:- Chain A: A.2247, A.2248, G.2250
No protein-ligand interaction detected (PLIP)MG.95: 2 residues within 4Å:- Chain A: G.875, A.876
No protein-ligand interaction detected (PLIP)MG.96: 3 residues within 4Å:- Chain A: A.1408, A.1619, C.1620
No protein-ligand interaction detected (PLIP)MG.97: 1 residues within 4Å:- Chain A: A.1643
No protein-ligand interaction detected (PLIP)MG.98: 2 residues within 4Å:- Chain A: G.754, G.2586
No protein-ligand interaction detected (PLIP)MG.99: 1 residues within 4Å:- Chain A: G.182
No protein-ligand interaction detected (PLIP)MG.100: 3 residues within 4Å:- Chain A: C.1327, C.1328, G.1345
No protein-ligand interaction detected (PLIP)MG.101: 1 residues within 4Å:- Chain A: C.102
No protein-ligand interaction detected (PLIP)MG.102: 2 residues within 4Å:- Chain A: G.2832, A.2834
No protein-ligand interaction detected (PLIP)MG.103: 3 residues within 4Å:- Chain A: C.31, C.1214, C.1252
No protein-ligand interaction detected (PLIP)MG.104: 2 residues within 4Å:- Chain A: A.991, C.993
No protein-ligand interaction detected (PLIP)MG.105: 2 residues within 4Å:- Chain A: G.831, G.1201
No protein-ligand interaction detected (PLIP)MG.106: 2 residues within 4Å:- Chain A: C.1698, G.1754
No protein-ligand interaction detected (PLIP)MG.107: 2 residues within 4Å:- Chain A: C.1745, A.1746
No protein-ligand interaction detected (PLIP)MG.108: 2 residues within 4Å:- Chain A: G.1333, G.1337
No protein-ligand interaction detected (PLIP)MG.109: 2 residues within 4Å:- Chain A: A.14, G.15
No protein-ligand interaction detected (PLIP)MG.110: 2 residues within 4Å:- Chain A: A.1458, U.1459
No protein-ligand interaction detected (PLIP)MG.111: 3 residues within 4Å:- Chain A: A.1355, U.1618
- Chain R: T.55
No protein-ligand interaction detected (PLIP)MG.112: 1 residues within 4Å:- Chain A: G.501
No protein-ligand interaction detected (PLIP)MG.113: 3 residues within 4Å:- Chain A: C.750, U.1637, G.1638
No protein-ligand interaction detected (PLIP)MG.114: 5 residues within 4Å:- Chain A: G.2426, A.2427, A.2476, C.2477, C.2478
No protein-ligand interaction detected (PLIP)MG.115: 1 residues within 4Å:- Chain A: G.406
No protein-ligand interaction detected (PLIP)MG.116: 2 residues within 4Å:- Chain A: G.510, A.512
No protein-ligand interaction detected (PLIP)MG.117: 5 residues within 4Å:- Chain A: G.2576, A.2577
- Chain C: P.232, H.233, G.234
No protein-ligand interaction detected (PLIP)MG.118: 3 residues within 4Å:- Chain A: C.1979, A.1980
- Chain D: H.135
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:H.135, D:H.135
MG.119: 4 residues within 4Å:- Chain A: G.572, C.573, A.581
- Chain P: S.76
1 PLIP interactions:1 interactions with chain P- Metal complexes: P:S.76
MG.120: 3 residues within 4Å:- Chain A: G.1356, C.1411
- Chain R: I.53
No protein-ligand interaction detected (PLIP)MG.121: 2 residues within 4Å:- Chain B: G.84, G.85
No protein-ligand interaction detected (PLIP)MG.122: 3 residues within 4Å:- Chain A: A.2795, G.2797
- Chain L: G.4
1 PLIP interactions:1 interactions with chain L- Metal complexes: L:G.4
MG.123: 3 residues within 4Å:- Chain A: C.2703
- Chain D: K.111
- Chain L: H.3
No protein-ligand interaction detected (PLIP)MG.124: 2 residues within 4Å:- Chain A: G.2699
- Chain N: N.58
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Krupkin, M. et al., Avilamycin and evernimicin induce structural changes in rProteins uL16 and CTC that enhance the inhibition of A-site tRNA binding. Proc.Natl.Acad.Sci.USA (2016)
- Release Date
- 2016-11-09
- Peptides
- 50S ribosomal protein L2: C
50S ribosomal protein L3: D
50S ribosomal protein L4: E
50S ribosomal protein L5: F
50S ribosomal protein L6: G
50S ribosomal protein L13: H
50S ribosomal protein L14: I
50S ribosomal protein L15: J
50S ribosomal protein L16: K
50S ribosomal protein L17: L
50S ribosomal protein L18: M
50S ribosomal protein L19: N
50S ribosomal protein L20: O
50S ribosomal protein L21: P
50S ribosomal protein L22: Q
50S ribosomal protein L23: R
50S ribosomal protein L24: S
50S ribosomal protein L25: T
50S ribosomal protein L27: U
50S ribosomal protein L28: V
50S ribosomal protein L29: W
50S ribosomal protein L30: X
50S ribosomal protein L32: Y
50S ribosomal protein L33: Z
50S ribosomal protein L34: 0
50S ribosomal protein L35: 1 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:C
AD
BE
CF
DG
EH
GI
HJ
IK
JL
KM
LN
MO
NP
OQ
PR
QS
RT
SU
TV
UW
VX
WY
ZZ
10
21
3
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.58 Å
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 1 x 6O1: Evernimicin(Non-covalent)
- 123 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Krupkin, M. et al., Avilamycin and evernimicin induce structural changes in rProteins uL16 and CTC that enhance the inhibition of A-site tRNA binding. Proc.Natl.Acad.Sci.USA (2016)
- Release Date
- 2016-11-09
- Peptides
- 50S ribosomal protein L2: C
50S ribosomal protein L3: D
50S ribosomal protein L4: E
50S ribosomal protein L5: F
50S ribosomal protein L6: G
50S ribosomal protein L13: H
50S ribosomal protein L14: I
50S ribosomal protein L15: J
50S ribosomal protein L16: K
50S ribosomal protein L17: L
50S ribosomal protein L18: M
50S ribosomal protein L19: N
50S ribosomal protein L20: O
50S ribosomal protein L21: P
50S ribosomal protein L22: Q
50S ribosomal protein L23: R
50S ribosomal protein L24: S
50S ribosomal protein L25: T
50S ribosomal protein L27: U
50S ribosomal protein L28: V
50S ribosomal protein L29: W
50S ribosomal protein L30: X
50S ribosomal protein L32: Y
50S ribosomal protein L33: Z
50S ribosomal protein L34: 0
50S ribosomal protein L35: 1 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:C
AD
BE
CF
DG
EH
GI
HJ
IK
JL
KM
LN
MO
NP
OQ
PR
QS
RT
SU
TV
UW
VX
WY
ZZ
10
21
3