SMTL ID : 5jwl.1

Factor Inhibiting HIF D201E in Complex with Zn, and Alpha-Ketoglutarate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.1: 14 residues within 4Å: Chain A: Y.148, L.191, T.199, H.202, E.204, N.208, F.210, K.217, H.282, I.284, N.297, W.299 Ligands: PEG.2, ZN.3 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.191, A:T.199, A:F.210, A:I.284 Hydrogen bonds: A:Y.148, A:T.199, A:T.199, A:N.208, A:N.297 Salt bridges: A:K.217, A:H.282 AKG.6: 14 residues within 4Å: Chain B: Y.148, L.191, T.199, H.202, E.204, N.208, F.210, K.217, H.282, I.284, N.297, W.299 Ligands: PEG.7, ZN.8 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:L.191, B:T.199, B:F.210, B:I.284 Hydrogen bonds: B:Y.148, B:T.199, B:N.208, B:N.297 Salt bridges: B:K.217, B:H.282

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 9 residues within 4Å: Chain A: Y.105, Q.150, L.189, T.199, H.202, E.204, R.241, W.299 Ligands: AKG.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.241 PEG.7: 9 residues within 4Å: Chain B: Y.105, Q.150, L.189, T.199, H.202, E.204, R.241, W.299 Ligands: AKG.6 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.241

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: H.202, E.204, H.282 Ligands: AKG.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.202, A:E.204, A:H.282, H2O.1 ZN.8: 4 residues within 4Å: Chain B: H.202, E.204, H.282 Ligands: AKG.6 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.202, B:E.204, B:H.282, H2O.5

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: K.314, A.315 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.315 Water bridges: A:H.316 SO4.5: 4 residues within 4Å: Chain A: R.141, G.143, E.144, E.145 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.144, A:E.145 Salt bridges: A:R.141 SO4.9: 2 residues within 4Å: Chain B: K.314, A.315 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.315 Water bridges: B:H.316 SO4.10: 4 residues within 4Å: Chain B: R.141, G.143, E.144, E.145 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.144, B:E.145 Salt bridges: B:R.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hangasky, J.A. et al., Factor Inhibiting HIF D201E in Complex with Zn, and Alpha-Ketoglutarate. To Be Published

Release Date

2017-05-17

Peptides

Hypoxia-inducible factor 1-alpha inhibitor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Hypoxia-inducible factor 1-alpha inhibitor

Related Entries With Identical Sequence