SMTL ID : 5jx2.1

Crystal structure of MglB-2 (Tp0684) from Treponema pallidum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 7 residues within 4Å: Chain A: D.80, N.82, D.84, I.86, I.87, G.88, D.175 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.80, A:D.84, A:I.86, A:D.175, H2O.1

1 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.2: 6 residues within 4Å: Chain A: H.98, D.100, R.104, W.154, N.181, D.204 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:H.98, A:D.100, A:R.104, A:R.104, A:N.181, A:D.204, A:D.204 Water bridges: A:W.154, A:D.182, A:N.206 Salt bridges: A:D.204

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 9 residues within 4Å: Chain A: F.55, A.57, G.60, G.61, D.100, V.103, R.104, Y.203, N.281 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.100, A:D.100, A:R.104, A:R.104, A:Y.203 EDO.4: 3 residues within 4Å: Chain A: E.106, R.110, W.115 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brautigam, C.A. et al., The Tp0684 (MglB-2) Lipoprotein of Treponema pallidum: A Glucose-Binding Protein with Divergent Topology. Plos One (2016)

Release Date

2016-08-31

Peptides

Glucose/galactose-binding lipoprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucose/galactose-binding lipoprotein