SMTL ID : 5jxs.1

Mutant GC216/7AA of 3D polymerase from Foot-and-Mouth Disease Virus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x A- U- G- G- G- C- C- C: RNA Template(Non-covalent)

A-U-G-G-G-C-C-C.1: 33 residues within 4Å: Chain A: G.107, L.108, D.109, T.115, A.116, R.128, F.162, L.163, K.164, D.165, V.181, V.183, I.189, R.193, H.204, A.216, A.217, N.218, S.298, G.299, C.300, S.301, A.302, T.303, S.304, Y.336, R.416 Ligands: G-G-G-C-C-C.2, G-G-G-C-C-C.2, G-G-G-C-C-C.2, G-G-G-C-C-C.2, G-G-G-C-C-C.2, G-G-G-C-C-C.2 Protein-ligand interaction information (PLIP) not available

1 x G- G- G- C- C- C: RNA Primer(Non-covalent)

G-G-G-C-C-C.2: 24 residues within 4Å: Chain A: D.114, S.304, Y.336, G.337, D.338, D.339, L.386, K.387, R.388, M.403, I.411, R.416, T.419, E.422, K.423, S.426, V.427, L.430 Ligands: A-U-G-G-G-C-C-C.1, A-U-G-G-G-C-C-C.1, A-U-G-G-G-C-C-C.1, A-U-G-G-G-C-C-C.1, A-U-G-G-G-C-C-C.1, A-U-G-G-G-C-C-C.1 Protein-ligand interaction information (PLIP) not available

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: D.238, V.239, D.240, D.339, I.340 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:V.239, A:D.240, A:D.339, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Herod, M.R. et al., Both cis and trans Activities of Foot-and-Mouth Disease Virus 3D Polymerase Are Essential for Viral RNA Replication. J.Virol. (2016)

Release Date

2016-06-01

Peptides

RNA dependent RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA dependent RNA polymerase