SMTL ID : 5jxu.1

Structural basis for the catalytic activity of Thermomonospora curvata heme-containing DyP-type peroxidase.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 23 residues within 4Å: Chain A: N.208, Q.212, L.213, D.214, G.215, T.216, V.217, I.250, M.252, V.269, R.271, H.306, I.307, A.310, H.311, M.319, R.321, F.342, V.356, Q.357, L.360, L.367, T.371 25 PLIP interactions: 25 interactions with chain A, Hydrophobic interactions: A:Q.212, A:V.217, A:I.250, A:I.250, A:V.269, A:I.307, A:A.310, A:F.342, A:V.356, A:L.360, A:L.367, A:T.371 Hydrogen bonds: A:G.215, A:T.216, A:V.217 Water bridges: A:R.271, A:R.271, A:H.311, A:H.311 Salt bridges: A:R.271, A:H.311, A:R.321 pi-Stacking: A:F.342 pi-Cation interactions: A:R.321 Metal complexes: A:H.306 HEM.2: 22 residues within 4Å: Chain B: N.208, Q.212, L.213, D.214, G.215, T.216, V.217, I.250, M.252, R.271, H.306, I.307, A.310, H.311, M.319, R.321, F.342, V.356, Q.357, L.360, L.367, T.371 20 PLIP interactions: 20 interactions with chain B, Hydrophobic interactions: B:Q.212, B:I.307, B:A.310, B:F.342, B:F.342, B:V.356, B:L.360, B:L.367, B:T.371 Hydrogen bonds: B:G.215, B:T.216, B:V.217 Water bridges: B:R.271, B:R.271, B:V.312 Salt bridges: B:R.271, B:H.311, B:R.321 pi-Cation interactions: B:R.321 Metal complexes: B:H.306

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shrestha, R. et al., Identification of Surface-Exposed Protein Radicals and A Substrate Oxidation Site in A-Class Dye-Decolorizing Peroxidase from Thermomonospora curvata. ACS Catal (2016)

Release Date

2016-10-19

Peptides

Dyp-type peroxidase family: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dyp-type peroxidase family

Related Entries With Identical Sequence