SMTL ID : 5jyk.1

Deg9 crystal under 289K

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-octamer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: V.306, L.307, G.308, I.309, I.381 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.307, A:G.308, A:I.309, A:I.309 Water bridges: A:P.305, A:S.378 GOL.2: 5 residues within 4Å: Chain C: V.306, L.307, G.308, I.309, I.381 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:L.307, C:G.308, C:I.309, C:I.309 Water bridges: C:P.305, C:S.378 GOL.3: 5 residues within 4Å: Chain E: V.306, L.307, G.308, I.309, I.381 6 PLIP interactions: 6 interactions with chain E Hydrogen bonds: E:L.307, E:G.308, E:I.309, E:I.309 Water bridges: E:P.305, E:S.378 GOL.4: 5 residues within 4Å: Chain G: V.306, L.307, G.308, I.309, I.381 6 PLIP interactions: 6 interactions with chain G Hydrogen bonds: G:L.307, G:G.308, G:I.309, G:I.309 Water bridges: G:P.305, G:S.378

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ouyang, M. et al., The crystal structure of Deg9 reveals a novel octameric-type HtrA protease. Nat Plants (2017)

Release Date

2017-05-31

Peptides

Protease Do-like 9: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

Protease Do-like 9

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