SMTL ID : 5jyl.1 (1 other biounit)

Human P-cadherin MEC1 with scFv TSP7 bound

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain B: T.30, Y.54, K.74 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.30, B:Y.54, B:K.74

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain B: Q.111, G.112, T.113, T.114 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.111, B:G.112, B:T.114, B:T.114, B:T.114

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain B: Y.101, D.107, Y.108, H.193, S.194 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kudo, S. et al., Disruption of cell adhesion by an antibody targeting the cell-adhesive intermediate (X-dimer) of human P-cadherin. Sci Rep (2017)

Release Date

2016-12-28

Peptides

Cadherin-3: A
scFv TSP7: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cadherin-3

scFv TSP7

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