SMTL ID : 5jzk.1

The Structure of Ultra Stable Green Fluorescent Protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

4 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 6 residues within 4Å: Chain A: N.153, F.154, S.214, V.215, L.216 Chain B: K.52 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:K.52, B:K.52, A:F.154, A:L.216, A:L.216 NO3.2: 6 residues within 4Å: Chain A: E.104, R.105, T.106, Y.191, Q.192, Q.193 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.104, A:T.106, A:T.106 Water bridges: A:Q.192, A:Q.192 NO3.5: 6 residues within 4Å: Chain A: K.52 Chain B: N.153, F.154, S.214, V.215, L.216 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:F.154, B:L.216, B:L.216, A:K.52, A:K.52 NO3.6: 6 residues within 4Å: Chain B: E.104, R.105, T.106, Y.191, Q.192, Q.193 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.106 Water bridges: B:R.105, B:T.106, B:Q.192, B:Q.192

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: R.118, A.119, E.120, R.131, E.133 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.118, A:R.118 EDO.8: 3 residues within 4Å: Chain B: R.118, R.131, E.133 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.118, B:E.133

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: P.67, W.68, P.69 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 3 residues within 4Å: Chain B: D.219, N.221, E.222 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scott, D.J. et al., A Novel Ultra-Stable, Monomeric Green Fluorescent Protein For Direct Volumetric Imaging of Whole Organs Using CLARITY. Sci Rep (2018)

Release Date

2017-12-06

Peptides

Green fluorescent protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Green fluorescent protein