SMTL ID : 5k06.1

Recombinant bovine beta-lactoglobulin with uncleaved N-terminal methionine (rBlgB)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: K.9, G.10, P.80 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.9, A:G.10 GOL.4: 3 residues within 4Å: Chain B: K.9, G.10, P.80 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.9, B:G.10

2 x MYR: MYRISTIC ACID(Non-covalent)

MYR.2: 14 residues within 4Å: Chain A: P.39, V.42, L.47, L.55, I.57, L.59, I.85, A.87, L.88, N.89, N.91, V.93, F.106, M.108 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:P.39, A:V.42, A:L.47, A:L.55, A:I.57, A:I.85, A:V.93, A:F.106, A:F.106 Hydrogen bonds: A:L.88, A:N.89, A:N.91 MYR.5: 14 residues within 4Å: Chain B: P.39, V.42, L.47, L.55, I.57, L.59, I.85, A.87, L.88, N.89, N.91, V.93, F.106, M.108 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:P.39, B:V.42, B:L.47, B:L.55, B:I.57, B:I.85, B:V.93, B:F.106, B:F.106 Hydrogen bonds: B:L.88, B:N.89, B:N.91

2 x SIN: SUCCINIC ACID(Non-covalent)

SIN.3: 12 residues within 4Å: Chain A: L.33, D.34, A.35, R.41 Chain B: I.30, S.31, L.33, D.34, A.35, R.41, I.148 Ligands: SIN.6 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:D.34, B:I.148 Hydrogen bonds: B:A.35, A:L.33, A:A.35 Salt bridges: B:R.41, A:R.41 SIN.6: 12 residues within 4Å: Chain A: I.30, S.31, L.33, D.34, A.35, R.41, I.148 Chain B: L.33, D.34, A.35, R.41 Ligands: SIN.3 8 PLIP interactions: 3 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:L.33, B:A.35, A:D.34, A:A.35 Salt bridges: B:R.41, A:R.41 Hydrophobic interactions: A:D.34, A:I.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Loch, J.I. et al., Engineered beta-Lactoglobulin Produced in E. coli: Purification, Biophysical and Structural Characterisation. Mol Biotechnol. (2016)

Release Date

2016-07-20

Peptides

Beta-lactoglobulin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Beta-lactoglobulin