SMTL ID : 5k0b.1 (7 other biounits)

Crystal Structure of COMT in complex with 2,4-dimethyl-5-[3-(1-phenylethyl)-1H-pyrazol-5-yl]-1,3-thiazole

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.36 Å

Oligo State

monomer

Ligands

1 x 6PS: 2,4-dimethyl-5-{3-[(1R)-1-phenylethyl]-1H-pyrazol-5-yl}-1,3-thiazole(Non-covalent)

6PS.1: 15 residues within 4Å: Chain A: M.39, G.65, Y.67, M.88, E.89, I.90, G.116, A.117, S.118, Q.119, D.140, H.141, W.142, R.145 Ligands: PO4.4 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.67, A:M.88, A:I.90, A:H.141, A:W.142 Hydrogen bonds: A:I.90, A:S.118 pi-Stacking: A:H.141, A:W.142, A:W.142, A:W.142

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 2 residues within 4Å: Chain A: S.185, S.186 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.186, A:S.186, A:S.186 Water bridges: A:S.186, A:S.186, A:S.187 PO4.3: 2 residues within 4Å: Chain A: T.191, Y.193 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.193 PO4.4: 3 residues within 4Å: Chain A: W.142, K.143 Ligands: 6PS.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.141, A:K.143

2 x K: POTASSIUM ION(Non-covalent)

K.5: 4 residues within 4Å: Chain A: V.182, R.183, S.185, F.188 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:V.182, A:R.183, A:S.185, A:F.188, H2O.3 K.6: 1 residues within 4Å: Chain A: Y.196 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:Y.196

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lerner, C. et al., Design of Potent and Druglike Nonphenolic Inhibitors for Catechol O-Methyltransferase Derived from a Fragment Screening Approach Targeting the S-Adenosyl-l-methionine Pocket. J. Med. Chem. (2016)

Release Date

2016-09-07

Peptides

Catechol O-methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Catechol O-methyltransferase

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