SMTL ID : 5k0c.1 (1 other biounit)

Crystal Structure of COMT in complex with 2,4-dimethyl-5-[3-(2-phenylpropan-2-yl)-1H-pyrazol-5-yl]-1,3-thiazole

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x NHE: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID(Non-covalent)

NHE.1: 3 residues within 4Å: Chain A: W.142, K.143, D.144 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.142 Hydrogen bonds: A:K.143, A:D.144 Water bridges: A:D.144

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: N.91 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.91 EDO.3: 5 residues within 4Å: Chain A: I.90, A.117, Q.119, W.142, R.145 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.119, A:R.145, A:R.145

1 x 6OZ: 2,4-dimethyl-5-[3-(2-phenylpropan-2-yl)-1H-pyrazol-5-yl]-1,3-thiazole(Non-covalent)

6OZ.4: 13 residues within 4Å: Chain A: G.65, Y.67, M.88, E.89, I.90, G.116, A.117, S.118, Q.119, D.140, H.141, W.142, R.145 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.67, A:M.88, A:H.141, A:W.142, A:R.145 Hydrogen bonds: A:I.90, A:S.118 pi-Stacking: A:H.141, A:W.142, A:W.142, A:W.142, A:W.142

2 x NA: SODIUM ION(Non-functional Binders)

NA.5: 3 residues within 4Å: Chain A: D.140, D.168, N.169 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.168, A:N.169, A:N.169 NA.6: 4 residues within 4Å: Chain A: V.182, R.183, S.185, F.188 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.183

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lerner, C. et al., Design of Potent and Druglike Nonphenolic Inhibitors for Catechol O-Methyltransferase Derived from a Fragment Screening Approach Targeting the S-Adenosyl-l-methionine Pocket. J. Med. Chem. (2016)

Release Date

2016-09-07

Peptides

Catechol O-methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Catechol O-methyltransferase

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