SMTL ID : 5k0p.1

Crystal structure of the archaeosine synthase QueF-Like in the apo form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

homo-10-mer

Ligands

10 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.1: 6 residues within 4Å: Chain A: C.21, P.22, I.23, D.28, L.61, Y.90 No protein-ligand interaction detected (PLIP) SCN.2: 4 residues within 4Å: Chain B: C.21, P.22, D.28, H.62 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.62 Water bridges: B:E.63 SCN.4: 6 residues within 4Å: Chain C: C.21, P.22, I.23, D.28, L.61, Y.90 No protein-ligand interaction detected (PLIP) SCN.6: 5 residues within 4Å: Chain D: C.21, P.22, I.23, D.28, Y.90 No protein-ligand interaction detected (PLIP) SCN.7: 5 residues within 4Å: Chain E: C.21, P.22, D.28, L.61, Y.90 No protein-ligand interaction detected (PLIP) SCN.9: 4 residues within 4Å: Chain F: C.21, P.22, D.28, H.62 No protein-ligand interaction detected (PLIP) SCN.10: 5 residues within 4Å: Chain G: C.21, P.22, I.23, D.28, Y.90 No protein-ligand interaction detected (PLIP) SCN.11: 6 residues within 4Å: Chain H: C.21, P.22, I.23, D.28, L.61, Y.90 No protein-ligand interaction detected (PLIP) SCN.13: 6 residues within 4Å: Chain I: C.21, P.22, I.23, D.28, L.61, Y.90 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:D.28 SCN.14: 6 residues within 4Å: Chain J: C.21, P.22, I.23, D.28, L.61, Y.90 No protein-ligand interaction detected (PLIP)

3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 2 residues within 4Å: Chain C: Y.89 Chain H: Y.89 No protein-ligand interaction detected (PLIP) PGE.5: 3 residues within 4Å: Chain B: Y.89 Chain D: Y.89, E.94 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.94 PGE.8: 4 residues within 4Å: Chain F: R.16, Y.89 Chain G: Y.89, E.94 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:R.16

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.12: 5 residues within 4Å: Chain A: Y.89, E.94 Chain I: R.16, K.87, Y.89 3 PLIP interactions: 3 interactions with chain I Hydrogen bonds: I:R.16, I:R.16, I:K.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mei, X. et al., Crystal structure of the archaeosine synthase QueF-like-Insights into amidino transfer and tRNA recognition by the tunnel fold. Proteins (2017)

Release Date

2016-11-09

Peptides

Archeaosine synthase QueF-Like: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

Archeaosine synthase QueF-Like

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