SMTL ID : 5k10.1

Cryo-EM structure of isocitrate dehydrogenase (IDH1)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.80 Å

Oligo State

homo-dimer

Ligands

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 20 residues within 4Å: Chain A: E.15, K.70, A.72, T.73, I.74, T.75, R.80, N.94, L.286, E.304, H.307, G.308, T.309, V.310, T.311, R.312, H.313, T.325, N.326, D.373 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:E.15, A:T.73, A:T.75, A:R.80, A:N.94, A:E.304, A:T.309, A:T.309, A:V.310, A:T.311, A:T.311, A:T.325, A:N.326, A:N.326, A:D.373 Salt bridges: A:R.312 pi-Cation interactions: A:H.313 NDP.2: 20 residues within 4Å: Chain B: E.15, K.70, A.72, T.73, I.74, T.75, R.80, N.94, L.286, E.304, H.307, G.308, T.309, V.310, T.311, R.312, H.313, T.325, N.326, D.373 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:E.15, B:T.73, B:T.75, B:R.80, B:N.94, B:E.304, B:T.309, B:T.309, B:V.310, B:T.311, B:T.311, B:T.325, B:N.326, B:N.326, B:D.373 Salt bridges: B:R.312 pi-Cation interactions: B:H.313

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Merk, A. et al., Breaking Cryo-EM Resolution Barriers to Facilitate Drug Discovery. Cell (2016)

Release Date

2016-06-08

Peptides

Isocitrate dehydrogenase [NADP] cytoplasmic: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Isocitrate dehydrogenase [NADP] cytoplasmic

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