SMTL ID : 5k1z.1

Joint X-ray/neutron structure of MTAN complex with p-ClPh-Thio-DADMe-ImmA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

2 x 4CT: (3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-{[(4-chlorophenyl)sulfanyl]methyl}pyrrolidin-3-ol(Covalent)

4CT.1: 24 residues within 4Å: Chain A: A.8, M.9, I.51, G.52, V.77, A.78, G.79, Q.151, F.152, V.153, V.171, E.172, M.173, E.174, R.193, S.196, D.197, A.199, A.203, F.207 Chain B: L.103, F.106, H.108, P.114 16 PLIP interactions: 14 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:I.51, A:A.78, A:F.207, B:P.114 Hydrogen bonds: A:G.79, A:V.153, A:M.173, A:E.174, A:D.197, A:D.197 Water bridges: A:V.77, A:R.193 Salt bridges: A:E.12, A:E.174 pi-Stacking: A:F.152, B:F.106 4CT.2: 24 residues within 4Å: Chain A: L.103, F.106, H.108, P.114 Chain B: A.8, M.9, I.51, G.52, V.77, A.78, G.79, Q.151, F.152, V.153, V.171, E.172, M.173, E.174, R.193, S.196, D.197, A.199, A.203, F.207 15 PLIP interactions: 13 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:I.51, B:A.78, B:F.207, A:P.114 Hydrogen bonds: B:G.79, B:V.153, B:E.174, B:D.197, B:D.197 Water bridges: B:V.77, B:R.193 Salt bridges: B:E.12, B:E.174 pi-Stacking: B:F.152, A:F.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Banco, M.T. et al., Neutron structures of the Helicobacter pylori 5'-methylthioadenosine nucleosidase highlight proton sharing and protonation states. Proc. Natl. Acad. Sci. U.S.A. (2016)

Release Date

2016-11-16

Peptides

Aminodeoxyfutalosine nucleosidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Aminodeoxyfutalosine nucleosidase

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