- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.18 Å
- Oligo State
- hetero-4-2-mer
- Ligands
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.2: 12 residues within 4Å:- Chain A: S.127, W.128, R.173, R.187, N.195, D.229, E.241, N.243
- Chain E: E.53
- Ligands: ADP.1, MG.3, MG.4
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:W.128, A:R.187, A:N.243
- Water bridges: A:R.187
- Salt bridges: A:R.173
PO4.6: 12 residues within 4Å:- Chain B: S.127, W.128, R.173, R.187, N.195, D.229, E.241, N.243
- Chain F: E.53
- Ligands: ADP.5, MG.7, MG.8
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:S.127, B:W.128, B:R.187, B:N.195, B:N.195, B:N.243
- Water bridges: B:R.187
- Salt bridges: B:R.173
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 6 residues within 4Å:- Chain A: N.195, D.229, E.241
- Ligands: ADP.1, PO4.2, MG.4
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.229, A:E.241, H2O.1
MG.4: 6 residues within 4Å:- Chain A: S.127, E.241, N.243
- Ligands: ADP.1, PO4.2, MG.3
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.241, A:E.241, H2O.1
MG.7: 6 residues within 4Å:- Chain B: N.195, D.229, E.241
- Ligands: ADP.5, PO4.6, MG.8
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.229, B:E.241, H2O.5
MG.8: 6 residues within 4Å:- Chain B: S.127, E.241, N.243
- Ligands: ADP.5, PO4.6, MG.7
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.241, B:E.241, H2O.5
- 1 x SO4: SULFATE ION(Non-functional Binders)
- 2 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yoshida, A. et al., Lysine Biosynthesis of Thermococcus kodakarensis with the Capacity to Function as an Ornithine Biosynthetic System. J. Biol. Chem. (2016)
- Release Date
- 2016-09-07
- Peptides
- RimK-related lysine biosynthesis protein: ABCD
Probable lysine biosynthesis protein: EF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.18 Å
- Oligo State
- hetero-4-2-mer
- Ligands
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 1 x SO4: SULFATE ION(Non-functional Binders)
- 2 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yoshida, A. et al., Lysine Biosynthesis of Thermococcus kodakarensis with the Capacity to Function as an Ornithine Biosynthetic System. J. Biol. Chem. (2016)
- Release Date
- 2016-09-07
- Peptides
- RimK-related lysine biosynthesis protein: ABCD
Probable lysine biosynthesis protein: EF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F