SMTL ID : 5k2x.1

Crystal structure of M. tuberculosis UspC (tetragonal crystal form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

14 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: R.100, S.101 Ligands: IOD.2, IOD.9 Ligand excluded by PLIP IOD.2: 2 residues within 4Å: Chain A: S.101 Ligands: IOD.1 Ligand excluded by PLIP IOD.3: 4 residues within 4Å: Chain A: G.368, A.370, A.371, K.408 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: H.301, D.303, A.304 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: R.395, Q.396 Ligand excluded by PLIP IOD.6: 1 residues within 4Å: Chain A: P.16 Ligand excluded by PLIP IOD.7: 4 residues within 4Å: Chain A: T.258, A.326, Y.338 Ligands: IOD.13 Ligand excluded by PLIP IOD.8: 2 residues within 4Å: Chain A: R.52, Y.70 Ligand excluded by PLIP IOD.9: 4 residues within 4Å: Chain A: R.100, S.101, G.102 Ligands: IOD.1 Ligand excluded by PLIP IOD.10: 2 residues within 4Å: Chain A: Q.185, L.189 Ligand excluded by PLIP IOD.11: 3 residues within 4Å: Chain A: R.141, E.214, R.217 Ligand excluded by PLIP IOD.12: 1 residues within 4Å: Chain A: R.172 Ligand excluded by PLIP IOD.13: 5 residues within 4Å: Chain A: T.258, G.325, Y.338, W.342 Ligands: IOD.7 Ligand excluded by PLIP IOD.14: 2 residues within 4Å: Chain A: Y.44, Y.70 Ligand excluded by PLIP

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.15: 5 residues within 4Å: Chain A: D.86, A.87, A.88, D.89, W.90 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.87, A:D.89

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.16: 7 residues within 4Å: Chain A: K.82, I.83, Q.84, T.85, R.306, L.309, A.310 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.83, A:T.85, A:R.306 Hydrogen bonds: A:Q.84, A:Q.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fullam, E. et al., Structural and functional analysis of the solute-binding protein UspC from Mycobacterium tuberculosis that is specific for amino sugars. Open Biology (2016)

Release Date

2016-06-01

Peptides

Sugar ABC transporter permease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Sugar ABC transporter permease