- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.68 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.2: 14 residues within 4Å:- Chain A: S.390, V.391, H.394, N.435, M.436, L.439, R.525, R.528, Y.573
- Chain B: H.340, R.341, Q.402, Y.565
- Ligands: MG.4
16 PLIP interactions:11 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: A:S.390, A:Y.573, B:R.341, B:Q.402, B:Y.565, B:Y.565
- Water bridges: A:R.528, A:R.528
- Salt bridges: A:R.525, A:R.525, A:R.528, A:R.528, A:R.528, B:H.340
- pi-Stacking: A:H.394, A:H.394
ATP.6: 15 residues within 4Å:- Chain A: H.340, R.341, Q.402, Y.565, D.569
- Chain B: S.390, V.391, H.394, N.435, M.436, L.439, R.525, R.528, Y.573
- Ligands: MG.7
22 PLIP interactions:16 interactions with chain B, 6 interactions with chain A- Hydrogen bonds: B:S.390, B:H.394, B:R.528, B:Y.573, B:Y.573, A:H.340, A:R.341, A:R.341, A:Q.402, A:D.569
- Water bridges: B:R.528, B:R.528, B:R.528, B:R.528
- Salt bridges: B:R.525, B:R.525, B:R.525, B:R.528, B:R.528, A:H.340
- pi-Stacking: B:H.394, B:H.394
- 2 x 6QA: ~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] 5-[(2~{R},3~{R},5~{R},6~{S})-6-methyl-3,5-bis(oxidanyl)oxan-2-yl]oxypentanethioate(Non-covalent)
6QA.3: 27 residues within 4Å:- Chain A: A.112, A.116, L.117, Y.147, Q.149, G.155, S.156, N.157, L.158, R.159, F.243, H.281, K.283, Y.286, M.289, I.292, R.293, E.299, H.382, Y.431, A.432, G.433, V.437, M.438, Q.441, R.444
- Ligands: FAD.1
22 PLIP interactions:22 interactions with chain A- Hydrophobic interactions: A:A.112, A:L.117, A:F.243, A:Y.431
- Hydrogen bonds: A:Q.149, A:S.156, A:L.158, A:R.159, A:R.293, A:Y.431, A:A.432, A:G.433
- Water bridges: A:A.112, A:T.150, A:G.155, A:Q.295, A:Y.431
- Salt bridges: A:K.283, A:K.283, A:R.444
- pi-Stacking: A:H.382, A:H.382
6QA.8: 27 residues within 4Å:- Chain B: A.112, A.116, L.117, Y.147, Q.149, G.155, S.156, N.157, L.158, R.159, F.243, K.283, Y.286, M.289, I.292, R.293, E.299, H.382, Y.431, A.432, G.433, V.437, M.438, Q.441, R.444, K.448
- Ligands: FAD.5
27 PLIP interactions:27 interactions with chain B- Hydrophobic interactions: B:A.112, B:L.117, B:F.243, B:Y.431, B:Q.441
- Hydrogen bonds: B:Q.149, B:S.156, B:L.158, B:R.159, B:Y.286, B:R.293, B:R.293, B:Y.431, B:A.432, B:G.433, B:Q.441
- Water bridges: B:T.150, B:G.155, B:Q.295, B:Q.300, B:Y.431, B:Y.431
- Salt bridges: B:K.283, B:K.283, B:R.444, B:K.448
- pi-Cation interactions: B:K.283
- 2 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, X. et al., Structural characterization of acyl-CoA oxidases reveals a direct link between pheromone biosynthesis and metabolic state in Caenorhabditis elegans. Proc.Natl.Acad.Sci.USA (2016)
- Release Date
- 2016-08-24
- Peptides
- Acyl-coenzyme A oxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.68 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 2 x 6QA: ~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] 5-[(2~{R},3~{R},5~{R},6~{S})-6-methyl-3,5-bis(oxidanyl)oxan-2-yl]oxypentanethioate(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, X. et al., Structural characterization of acyl-CoA oxidases reveals a direct link between pheromone biosynthesis and metabolic state in Caenorhabditis elegans. Proc.Natl.Acad.Sci.USA (2016)
- Release Date
- 2016-08-24
- Peptides
- Acyl-coenzyme A oxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B