SMTL ID : 5k3o.2 (1 other biounit)

Wolinella succinogenes L-asparaginase P121 and L-Aspartic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

4 x ASP: ASPARTIC ACID(Non-covalent)

ASP.1: 14 residues within 4Å: Chain A: G.13, T.14, Y.27, A.29, G.59, S.60, Q.61, G.92, T.93, D.94, A.118, M.119 Chain B: N.252, E.287 13 PLIP interactions: 10 interactions with chain A, 2 Ligand-Ligand interactions, 1 interactions with chain B Hydrogen bonds: A:T.14, A:T.14, A:S.60, A:Q.61, A:T.93, A:D.94, D.1, D.1, B:E.287 Water bridges: A:Y.27, A:A.118, A:K.166 Salt bridges: A:K.166 ASP.2: 14 residues within 4Å: Chain A: N.252, E.287 Chain B: G.13, T.14, Y.27, A.29, G.59, S.60, Q.61, G.92, T.93, D.94, A.118, M.119 14 PLIP interactions: 1 interactions with chain A, 2 Ligand-Ligand interactions, 11 interactions with chain B Hydrogen bonds: A:E.287, D.2, D.2, B:T.14, B:T.14, B:Y.27, B:S.60, B:Q.61, B:T.93, B:D.94 Water bridges: B:I.15, B:K.166, B:K.166 Salt bridges: B:K.166 ASP.3: 14 residues within 4Å: Chain C: G.13, T.14, Y.27, A.29, G.59, S.60, Q.61, G.92, T.93, D.94, A.118, M.119 Chain D: N.252, E.287 13 PLIP interactions: 10 interactions with chain C, 2 Ligand-Ligand interactions, 1 interactions with chain D Hydrogen bonds: C:T.14, C:T.14, C:Y.27, C:S.60, C:Q.61, C:T.93, C:D.94, D.3, D.3, D:E.287 Water bridges: C:A.118, C:K.166 Salt bridges: C:K.166 ASP.4: 14 residues within 4Å: Chain C: N.252, E.287 Chain D: G.13, T.14, Y.27, A.29, G.59, S.60, Q.61, G.92, T.93, D.94, A.118, M.119 14 PLIP interactions: 1 interactions with chain C, 2 Ligand-Ligand interactions, 11 interactions with chain D Hydrogen bonds: C:E.287, D.4, D.4, D:T.14, D:T.14, D:S.60, D:Q.61, D:T.93, D:D.94 Water bridges: D:I.15, D:Y.27, D:K.166, D:K.166 Salt bridges: D:K.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nguyen, H.A. et al., The differential ability of asparagine and glutamine in promoting the closed/active enzyme conformation rationalizes the Wolinella succinogenes L-asparaginase substrate specificity. Sci Rep (2017)

Release Date

2017-03-29

Peptides

L-asparaginase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
C

D
D

L-asparaginase

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