- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.87 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
FAD.2: 36 residues within 4Å:- Chain A: L.99, R.161, G.222, G.223, G.224, T.246, L.247, M.248, M.263, L.264, G.265, M.266, H.267, G.268, G.286, V.287, R.288, D.290, R.292, V.293, D.310, I.311, D.312, E.315, G.328, D.329, V.330, V.400, Q.404, M.405, S.422, G.423, G.424, G.426
- Chain D: F.121
- Ligands: 6QL.3
25 PLIP interactions:23 interactions with chain A, 2 interactions with chain D- Hydrophobic interactions: A:V.400, D:F.121
- Hydrogen bonds: A:L.99, A:R.161, A:G.223, A:T.246, A:T.246, A:L.247, A:L.264, A:M.266, A:H.267, A:V.287, A:R.288, A:I.311, A:D.312, A:D.329, A:V.330, A:G.423
- Water bridges: A:R.161, A:N.227, A:R.288, A:R.288, A:D.290
- Salt bridges: A:R.288
- pi-Stacking: D:F.121
FAD.6: 36 residues within 4Å:- Chain B: L.99, R.161, G.222, G.223, G.224, T.246, L.247, M.248, M.263, L.264, G.265, M.266, H.267, G.268, G.286, V.287, R.288, D.290, R.292, V.293, D.310, I.311, D.312, E.315, G.328, D.329, V.330, V.400, Q.404, M.405, S.422, G.423, G.424, G.426
- Chain C: F.121
- Ligands: 6QL.7
25 PLIP interactions:23 interactions with chain B, 2 interactions with chain C- Hydrophobic interactions: B:V.400, C:F.121
- Hydrogen bonds: B:L.99, B:R.161, B:G.223, B:T.246, B:T.246, B:L.247, B:L.264, B:M.266, B:H.267, B:V.287, B:R.288, B:I.311, B:D.312, B:D.329, B:V.330, B:G.423
- Water bridges: B:R.161, B:N.227, B:R.288, B:R.288, B:D.290
- Salt bridges: B:R.288
- pi-Stacking: C:F.121
FAD.10: 36 residues within 4Å:- Chain B: F.121
- Chain C: L.99, R.161, G.222, G.223, G.224, T.246, L.247, M.248, M.263, L.264, G.265, M.266, H.267, G.268, G.286, V.287, R.288, D.290, R.292, V.293, D.310, I.311, D.312, E.315, G.328, D.329, V.330, V.400, Q.404, M.405, S.422, G.423, G.424, G.426
- Ligands: 6QL.11
26 PLIP interactions:24 interactions with chain C, 2 interactions with chain B- Hydrophobic interactions: C:V.400, B:F.121
- Hydrogen bonds: C:L.99, C:R.161, C:G.223, C:T.246, C:L.247, C:L.264, C:M.266, C:H.267, C:V.287, C:R.288, C:D.290, C:I.311, C:D.312, C:D.329, C:D.329, C:V.330, C:G.423
- Water bridges: C:R.161, C:N.227, C:R.288, C:R.288, C:D.290
- Salt bridges: C:R.288
- pi-Stacking: B:F.121
FAD.14: 36 residues within 4Å:- Chain A: F.121
- Chain D: L.99, R.161, G.222, G.223, G.224, T.246, L.247, M.248, M.263, L.264, G.265, M.266, H.267, G.268, G.286, V.287, R.288, D.290, R.292, V.293, D.310, I.311, D.312, E.315, G.328, D.329, V.330, V.400, Q.404, M.405, S.422, G.423, G.424, G.426
- Ligands: 6QL.15
26 PLIP interactions:24 interactions with chain D, 2 interactions with chain A- Hydrophobic interactions: D:V.400, A:F.121
- Hydrogen bonds: D:L.99, D:R.161, D:G.223, D:T.246, D:L.247, D:L.264, D:M.266, D:H.267, D:V.287, D:R.288, D:D.290, D:I.311, D:D.312, D:D.329, D:D.329, D:V.330, D:G.423
- Water bridges: D:R.161, D:N.227, D:R.288, D:R.288, D:D.290
- Salt bridges: D:R.288
- pi-Stacking: A:F.121
- 4 x 6QL: 2,6-bis[(4,6-dimethoxypyrimidin-2-yl)oxy]benzoic acid(Non-covalent)
6QL.3: 19 residues within 4Å:- Chain A: M.266, D.291, R.292, M.485, V.486, W.489, S.568, G.569
- Chain D: G.36, A.37, M.39, V.111, P.112, R.114, M.115, F.121, K.171, Q.175
- Ligands: FAD.2
14 PLIP interactions:9 interactions with chain D, 5 interactions with chain A- Hydrophobic interactions: D:A.37, D:V.111, D:P.112
- Hydrogen bonds: D:R.114, A:R.292, A:R.292, A:S.568
- Water bridges: D:G.36, D:G.36, D:K.171
- Salt bridges: D:K.171, A:R.292
- pi-Stacking: D:F.121, A:W.489
6QL.7: 19 residues within 4Å:- Chain B: M.266, D.291, R.292, M.485, V.486, W.489, S.568, G.569
- Chain C: G.36, A.37, M.39, V.111, P.112, R.114, M.115, F.121, K.171, Q.175
- Ligands: FAD.6
14 PLIP interactions:9 interactions with chain C, 5 interactions with chain B- Hydrophobic interactions: C:A.37, C:V.111, C:P.112
- Hydrogen bonds: C:R.114, B:R.292, B:R.292, B:S.568
- Water bridges: C:G.36, C:G.36, C:K.171
- Salt bridges: C:K.171, B:R.292
- pi-Stacking: C:F.121, B:W.489
6QL.11: 19 residues within 4Å:- Chain B: G.36, A.37, M.39, V.111, P.112, R.114, M.115, F.121, K.171, Q.175
- Chain C: M.266, D.291, R.292, M.485, V.486, W.489, S.568, G.569
- Ligands: FAD.10
14 PLIP interactions:9 interactions with chain B, 5 interactions with chain C- Hydrophobic interactions: B:A.37, B:V.111, B:P.112
- Hydrogen bonds: B:R.114, C:R.292, C:R.292, C:S.568
- Water bridges: B:G.36, B:G.36, B:K.171
- Salt bridges: B:K.171, C:R.292
- pi-Stacking: B:F.121, C:W.489
6QL.15: 19 residues within 4Å:- Chain A: G.36, A.37, M.39, V.111, P.112, R.114, M.115, F.121, K.171, Q.175
- Chain D: M.266, D.291, R.292, M.485, V.486, W.489, S.568, G.569
- Ligands: FAD.14
14 PLIP interactions:9 interactions with chain A, 5 interactions with chain D- Hydrophobic interactions: A:A.37, A:V.111, A:P.112
- Hydrogen bonds: A:R.114, D:R.292, D:R.292, D:S.568
- Water bridges: A:G.36, A:G.36, A:K.171
- Salt bridges: A:K.171, D:R.292
- pi-Stacking: A:F.121, D:W.489
- 4 x TP9: (3Z)-4-{[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]AMINO}-3-MERCAPTOPENT-3-EN-1-YL TRIHYDROGEN DIPHOSPHATE(Non-covalent)
TP9.4: 26 residues within 4Å:- Chain A: V.400, G.401, Q.402, H.403, G.426, M.428, G.452, D.453, G.454, S.455, M.458, N.480, H.482, L.483, G.484, M.485, V.486
- Chain D: Y.33, P.34, G.35, E.59, T.82, P.85, N.89, Q.122
- Ligands: MG.1
25 PLIP interactions:18 interactions with chain A, 7 interactions with chain D- Hydrophobic interactions: A:M.428, A:L.483, A:L.483, A:V.486, D:Y.33, D:P.85
- Hydrogen bonds: A:Q.402, A:H.403, A:G.426, A:M.428, A:G.454, A:S.455, A:N.480, A:H.482, A:G.484, A:M.485
- Water bridges: A:D.453, A:D.453, D:G.36, D:Q.122, D:Q.122, D:Q.122, D:Q.122
- Salt bridges: A:H.403, A:H.403
TP9.8: 26 residues within 4Å:- Chain B: V.400, G.401, Q.402, H.403, G.426, M.428, G.452, D.453, G.454, S.455, M.458, N.480, H.482, L.483, G.484, M.485, V.486
- Chain C: Y.33, P.34, G.35, E.59, T.82, P.85, N.89, Q.122
- Ligands: MG.5
25 PLIP interactions:18 interactions with chain B, 7 interactions with chain C- Hydrophobic interactions: B:M.428, B:L.483, B:L.483, B:V.486, C:Y.33, C:P.85
- Hydrogen bonds: B:Q.402, B:H.403, B:G.426, B:M.428, B:G.454, B:S.455, B:N.480, B:H.482, B:G.484, B:M.485
- Water bridges: B:D.453, B:D.453, C:G.36, C:Q.122, C:Q.122, C:Q.122, C:Q.122
- Salt bridges: B:H.403, B:H.403
TP9.12: 26 residues within 4Å:- Chain B: Y.33, P.34, G.35, E.59, T.82, P.85, N.89, Q.122
- Chain C: V.400, G.401, Q.402, H.403, G.426, M.428, G.452, D.453, G.454, S.455, M.458, N.480, H.482, L.483, G.484, M.485, V.486
- Ligands: MG.9
25 PLIP interactions:18 interactions with chain C, 7 interactions with chain B- Hydrophobic interactions: C:M.428, C:L.483, C:L.483, C:V.486, B:Y.33, B:P.85
- Hydrogen bonds: C:Q.402, C:H.403, C:G.426, C:M.428, C:G.454, C:S.455, C:N.480, C:H.482, C:G.484, C:M.485
- Water bridges: C:D.453, C:D.453, B:G.36, B:Q.122, B:Q.122, B:Q.122, B:Q.122
- Salt bridges: C:H.403, C:H.403
TP9.16: 26 residues within 4Å:- Chain A: Y.33, P.34, G.35, E.59, T.82, P.85, N.89, Q.122
- Chain D: V.400, G.401, Q.402, H.403, G.426, M.428, G.452, D.453, G.454, S.455, M.458, N.480, H.482, L.483, G.484, M.485, V.486
- Ligands: MG.13
25 PLIP interactions:18 interactions with chain D, 7 interactions with chain A- Hydrophobic interactions: D:M.428, D:L.483, D:L.483, D:V.486, A:Y.33, A:P.85
- Hydrogen bonds: D:Q.402, D:H.403, D:G.426, D:M.428, D:G.454, D:S.455, D:N.480, D:H.482, D:G.484, D:M.485
- Water bridges: D:D.453, D:D.453, A:G.36, A:Q.122, A:Q.122, A:Q.122, A:Q.122
- Salt bridges: D:H.403, D:H.403
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Garcia, M.D. et al., Comprehensive understanding of acetohydroxyacid synthase inhibition by different herbicide families. Proc. Natl. Acad. Sci. U.S.A. (2017)
- Release Date
- 2017-02-08
- Peptides
- Acetolactate synthase, chloroplastic: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.87 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 4 x 6QL: 2,6-bis[(4,6-dimethoxypyrimidin-2-yl)oxy]benzoic acid(Non-covalent)
- 4 x TP9: (3Z)-4-{[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]AMINO}-3-MERCAPTOPENT-3-EN-1-YL TRIHYDROGEN DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Garcia, M.D. et al., Comprehensive understanding of acetohydroxyacid synthase inhibition by different herbicide families. Proc. Natl. Acad. Sci. U.S.A. (2017)
- Release Date
- 2017-02-08
- Peptides
- Acetolactate synthase, chloroplastic: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A