- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-12-mer
- Ligands
- 24 x SO4: SULFATE ION(Non-functional Binders)
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 6 residues within 4Å:- Chain A: Q.31, R.220, L.221, P.222, V.223, V.224
1 PLIP interactions:1 interactions with chain A- Water bridges: A:V.224
EDO.11: 6 residues within 4Å:- Chain C: Q.31, R.220, L.221, P.222, V.223, V.224
1 PLIP interactions:1 interactions with chain C- Water bridges: C:V.224
EDO.19: 6 residues within 4Å:- Chain E: Q.31, R.220, L.221, P.222, V.223, V.224
1 PLIP interactions:1 interactions with chain E- Water bridges: E:V.224
EDO.27: 7 residues within 4Å:- Chain G: Q.31, R.34, R.220, L.221, P.222, V.223, V.224
2 PLIP interactions:2 interactions with chain G- Hydrogen bonds: G:Q.31, G:Q.31
EDO.32: 7 residues within 4Å:- Chain H: Q.31, R.34, R.220, L.221, P.222, V.223, V.224
No protein-ligand interaction detected (PLIP)EDO.35: 7 residues within 4Å:- Chain I: Q.31, R.34, R.220, L.221, P.222, V.223, V.224
2 PLIP interactions:2 interactions with chain I- Hydrogen bonds: I:Q.31, I:Q.31
EDO.40: 7 residues within 4Å:- Chain J: Q.31, R.34, R.220, L.221, P.222, V.223, V.224
No protein-ligand interaction detected (PLIP)EDO.43: 7 residues within 4Å:- Chain K: Q.31, R.34, R.220, L.221, P.222, V.223, V.224
2 PLIP interactions:2 interactions with chain K- Hydrogen bonds: K:Q.31, K:Q.31
EDO.48: 7 residues within 4Å:- Chain L: Q.31, R.34, R.220, L.221, P.222, V.223, V.224
No protein-ligand interaction detected (PLIP)- 15 x CL: CHLORIDE ION(Non-functional Binders)
CL.6: 6 residues within 4Å:- Chain B: P.208, Y.209, D.210
- Chain J: P.208, Y.209, D.210
Ligand excluded by PLIPCL.7: 2 residues within 4Å:- Chain B: N.295
- Chain E: L.125
Ligand excluded by PLIPCL.8: 2 residues within 4Å:- Chain A: N.295
- Chain B: L.125
Ligand excluded by PLIPCL.14: 6 residues within 4Å:- Chain D: P.208, Y.209, D.210
- Chain L: P.208, Y.209, D.210
Ligand excluded by PLIPCL.15: 2 residues within 4Å:- Chain A: L.125
- Chain D: N.295
Ligand excluded by PLIPCL.16: 2 residues within 4Å:- Chain C: N.295
- Chain D: L.125
Ligand excluded by PLIPCL.22: 6 residues within 4Å:- Chain F: P.208, Y.209, D.210
- Chain H: P.208, Y.209, D.210
Ligand excluded by PLIPCL.23: 2 residues within 4Å:- Chain C: L.125
- Chain F: N.295
Ligand excluded by PLIPCL.24: 2 residues within 4Å:- Chain E: N.295
- Chain F: L.125
Ligand excluded by PLIPCL.28: 2 residues within 4Å:- Chain G: N.295
- Chain H: L.125
Ligand excluded by PLIPCL.29: 2 residues within 4Å:- Chain G: L.125
- Chain L: N.295
Ligand excluded by PLIPCL.36: 2 residues within 4Å:- Chain I: N.295
- Chain J: L.125
Ligand excluded by PLIPCL.37: 2 residues within 4Å:- Chain H: N.295
- Chain I: L.125
Ligand excluded by PLIPCL.44: 2 residues within 4Å:- Chain K: N.295
- Chain L: L.125
Ligand excluded by PLIPCL.45: 2 residues within 4Å:- Chain J: N.295
- Chain K: L.125
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Robinson, G.C. et al., Structural definition of the lysine swing in Arabidopsis thaliana PDX1: Intermediate channeling facilitating vitamin B6 biosynthesis. Proc.Natl.Acad.Sci.USA (2016)
- Release Date
- 2016-10-05
- Peptides
- Pyridoxal 5'-phosphate synthase subunit PDX1.3: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
DC
BD
DE
BF
DG
AH
CI
AJ
CK
AL
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-12-mer
- Ligands
- 24 x SO4: SULFATE ION(Non-functional Binders)
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 15 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Robinson, G.C. et al., Structural definition of the lysine swing in Arabidopsis thaliana PDX1: Intermediate channeling facilitating vitamin B6 biosynthesis. Proc.Natl.Acad.Sci.USA (2016)
- Release Date
- 2016-10-05
- Peptides
- Pyridoxal 5'-phosphate synthase subunit PDX1.3: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
DC
BD
DE
BF
DG
AH
CI
AJ
CK
AL
C