SMTL ID : 5k47.1

CryoEM structure of the human Polycystin-2/PKD2 TRP channel

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 4.22 Å

Oligo State

homo-tetramer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: L.191, N.192, Y.209 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain B: L.191, N.192, Y.209 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain C: L.191, N.192, Y.209 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 3 residues within 4Å: Chain D: L.191, N.192, Y.209 No protein-ligand interaction detected (PLIP)

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 2 residues within 4Å: Chain A: N.145, K.159 No protein-ligand interaction detected (PLIP) NAG.6: 1 residues within 4Å: Chain A: N.179 No protein-ligand interaction detected (PLIP) NAG.7: 2 residues within 4Å: Chain B: N.145, K.159 No protein-ligand interaction detected (PLIP) NAG.8: 1 residues within 4Å: Chain B: N.179 No protein-ligand interaction detected (PLIP) NAG.9: 2 residues within 4Å: Chain C: N.145, K.159 No protein-ligand interaction detected (PLIP) NAG.10: 1 residues within 4Å: Chain C: N.179 No protein-ligand interaction detected (PLIP) NAG.11: 2 residues within 4Å: Chain D: N.145, K.159 No protein-ligand interaction detected (PLIP) NAG.12: 1 residues within 4Å: Chain D: N.179 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grieben, M. et al., Structure of the polycystic kidney disease TRP channel Polycystin-2 (PC2). Nat. Struct. Mol. Biol. (2017)

Release Date

2016-08-24

Peptides

Polycystin-2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Polycystin-2

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