SMTL ID : 5k4c.1

Structure of eukaryotic translation initiation factor 3 subunit D (eIF3d) cap binding domain from Nasonia vitripennis, Crystal form 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: S.137, V.138, E.139, N.246, N.264, R.267, N.268 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:V.138, A:E.139, A:N.264, A:R.267, A:R.267, A:N.268, A:N.268 Water bridges: A:N.134, A:E.139, A:A.245 GOL.2: 6 residues within 4Å: Chain A: P.141, Q.142, D.143, N.149, W.240, L.244 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.142, A:D.143, A:N.149 Water bridges: A:E.139, A:L.244 GOL.3: 9 residues within 4Å: Chain A: K.30, E.31, G.32, R.202, W.204, L.281, L.282, M.325, W.329 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.31, A:G.32, A:R.202, A:L.282, A:W.329

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, A.S. et al., eIF3d is an mRNA cap-binding protein that is required for specialized translation initiation. Nature (2016)

Release Date

2016-07-27

Peptides

Eukaryotic translation initiation factor 3 subunit D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Eukaryotic translation initiation factor 3 subunit D

Related Entries With Identical Sequence