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SMTL ID : 5k4h.1
(1 other biounit)
Wolinella succinogenes L-asparaginase S121 + L-Glutamic acid
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.00 Å
Oligo State
homo-tetramer
Ligands
4 x
GLU
:
GLUTAMIC ACID
(Non-covalent)
GLU.1:
9 residues within 4Å:
Chain A:
G.59
,
S.60
,
Q.61
,
G.92
,
T.93
,
D.94
,
A.118
Chain B:
N.252
,
E.287
15
PLIP interactions
:
11 interactions with chain A
,
1 interactions with chain B
,
3 Ligand-Ligand interactions
Hydrogen bonds:
A:S.60
,
A:Q.61
,
A:T.93
,
A:D.94
,
A:D.94
,
B:E.287
,
E.1
,
E.1
,
E.1
Water bridges:
A:G.92
,
A:A.118
,
A:K.166
,
A:K.166
,
A:K.166
Salt bridges:
A:K.166
GLU.2:
9 residues within 4Å:
Chain A:
N.252
,
E.287
Chain B:
G.59
,
S.60
,
Q.61
,
G.92
,
T.93
,
D.94
,
A.118
8
PLIP interactions
:
8 interactions with chain B
,
Hydrogen bonds:
B:S.60
,
B:Q.61
,
B:Q.61
,
B:T.93
,
B:D.94
Water bridges:
B:A.118
,
B:K.166
Salt bridges:
B:K.166
GLU.3:
11 residues within 4Å:
Chain C:
G.13
,
T.14
,
G.59
,
S.60
,
Q.61
,
G.92
,
T.93
,
D.94
,
A.118
Chain D:
N.252
,
E.287
12
PLIP interactions
:
9 interactions with chain C
,
2 Ligand-Ligand interactions
,
1 interactions with chain D
Hydrophobic interactions:
C:T.14
Hydrogen bonds:
C:T.14
,
C:T.14
,
C:S.60
,
C:Q.61
,
C:Q.61
,
C:T.93
,
C:D.94
,
E.3
,
E.3
,
D:E.287
Water bridges:
C:K.166
GLU.4:
9 residues within 4Å:
Chain C:
N.252
,
E.287
Chain D:
G.59
,
S.60
,
Q.61
,
G.92
,
T.93
,
D.94
,
A.118
13
PLIP interactions
:
9 interactions with chain D
,
3 Ligand-Ligand interactions
,
1 interactions with chain C
Hydrogen bonds:
D:S.60
,
D:Q.61
,
D:T.93
,
D:D.94
,
D:D.94
,
E.4
,
E.4
,
E.4
,
C:E.287
Water bridges:
D:A.118
,
D:K.166
,
D:K.166
Salt bridges:
D:K.166
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Nguyen, H.A. et al., The differential ability of asparagine and glutamine in promoting the closed/active enzyme conformation rationalizes the Wolinella succinogenes L-asparaginase substrate specificity. Sci Rep (2017)
Release Date
2017-03-29
Peptides
L-asparaginase:
A
B
C
D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
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Secondary Structure
None
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Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
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L-asparaginase
Related Entries With Identical Sequence
5k4g.1
|
5k4g.2
|
5k4h.2
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
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