SMTL ID : 5k4i.1

Crystal Structure of ERK2 in complex with compound 22

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

1 x 6QB: 1-[(1~{S})-1-(4-chloranyl-3-fluoranyl-phenyl)-2-oxidanyl-ethyl]-4-[2-[(2-methylpyrazol-3-yl)amino]pyrimidin-4-yl]pyridin-2-one(Non-covalent)

6QB.1: 22 residues within 4Å: Chain A: I.23, G.24, E.25, G.26, G.29, M.30, V.31, A.44, K.46, Q.97, D.98, L.99, M.100, E.101, T.102, D.103, K.106, N.146, L.148, C.158, D.159 Ligands: EDO.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.23, A:V.31, A:A.44, A:K.46, A:L.148, A:L.148 Hydrogen bonds: A:K.46, A:M.100, A:M.100, A:D.159, A:D.159 Water bridges: A:K.106, A:K.143, A:K.143

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: I.23, K.106 Ligands: 6QB.1 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.106 EDO.3: 6 residues within 4Å: Chain A: R.83, A.84, Q.89, M.90, K.91, D.92 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.84, A:K.91, A:D.92, A:D.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blake, J.F. et al., Discovery of (S)-1-(1-(4-Chloro-3-fluorophenyl)-2-hydroxyethyl)-4-(2-((1-methyl-1H-pyrazol-5-yl)amino)pyrimidin-4-yl)pyridin-2(1H)-one (GDC-0994), an Extracellular Signal-Regulated Kinase 1/2 (ERK1/2) Inhibitor in Early Clinical Development. J.Med.Chem. (2016)

Release Date

2016-07-06

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1