SMTL ID : 5k4p.1

Catalytic Domain of MCR-1 phosphoethanolamine transferase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.32 Å

Oligo State

homo-dimer

Ligands

20 x ZN: ZINC ION(Non-covalent)(Non-functional Binders)

ZN.1: 4 residues within 4Å: Chain A: E.47, T.86, D.266, H.267 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.47, A:E.47, A:T.86, A:D.266, A:H.267 ZN.2: 3 residues within 4Å: Chain A: T.86, H.196 Ligands: ZN.3 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.196, H2O.1, H2O.10, H2O.11 ZN.3: 2 residues within 4Å: Chain A: T.86 Ligands: ZN.2 No protein-ligand interaction detected (PLIP) ZN.4: 1 residues within 4Å: Chain A: E.206 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.206 ZN.5: 3 residues within 4Å: Chain A: E.101 Chain B: D.103 Ligands: ZN.21 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Metal complexes: B:D.103, A:E.101 ZN.6: 2 residues within 4Å: Chain A: D.105 Ligands: ZN.10 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.105, H2O.10 ZN.7: 1 residues within 4Å: Chain A: D.62 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.62, H2O.4 ZN.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ZN.9: 3 residues within 4Å: Chain A: D.100, Y.102, D.103 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:Y.102, A:D.103, H2O.1, H2O.8, H2O.11, H2O.15 ZN.10: 3 residues within 4Å: Chain A: D.103 Ligands: ZN.6, ZN.16 No protein-ligand interaction detected (PLIP) ZN.12: 4 residues within 4Å: Chain B: E.47, T.86, D.266, H.267 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.47, B:E.47, B:T.86, B:D.266, B:H.267 ZN.13: 3 residues within 4Å: Chain B: T.86, H.196 Ligands: ZN.14 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.196, H2O.15, H2O.25, H2O.26 ZN.14: 2 residues within 4Å: Chain B: T.86 Ligands: ZN.13 No protein-ligand interaction detected (PLIP) ZN.15: 1 residues within 4Å: Chain B: E.206 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.206 ZN.16: 3 residues within 4Å: Chain A: D.103 Chain B: E.101 Ligands: ZN.10 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Metal complexes: B:E.101, A:D.103 ZN.17: 2 residues within 4Å: Chain B: D.105 Ligands: ZN.21 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.105, H2O.24 ZN.18: 1 residues within 4Å: Chain B: D.62 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.62, H2O.18 ZN.19: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ZN.20: 3 residues within 4Å: Chain B: D.100, Y.102, D.103 6 PLIP interactions: 2 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:Y.102, B:D.103, H2O.1, H2O.15, H2O.22, H2O.25 ZN.21: 3 residues within 4Å: Chain B: D.103 Ligands: ZN.5, ZN.17 No protein-ligand interaction detected (PLIP)

2 x SOR: sorbitol(Non-covalent)

SOR.11: 8 residues within 4Å: Chain A: G.83, T.84, S.85, Y.88, G.280, M.281, P.282, N.283 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:T.84, A:T.84, A:S.85, A:S.85, A:M.281, A:N.283, A:N.283 Water bridges: A:N.283, A:A.284 SOR.22: 8 residues within 4Å: Chain B: G.83, T.84, S.85, Y.88, G.280, M.281, P.282, N.283 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:T.84, B:T.84, B:T.84, B:S.85, B:S.85, B:M.281, B:N.283, B:N.283 Water bridges: B:N.283, B:A.284

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stojanoski, V. et al., Structure of the catalytic domain of the colistin resistance enzyme MCR-1. Bmc Biol. (2016)

Release Date

2016-08-31

Peptides

Probable phosphatidylethanolamine transferase Mcr-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Probable phosphatidylethanolamine transferase Mcr-1