SMTL ID : 5k58.1

Structure of the K. pneumonia SlmA-DNA complex bound to the C-terminal of the cell division protein FtsZ

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.77 Å

Oligo State

homo-tetramer

Ligands

4 x LEU- ASP- ILE- PRO- ALA- PHE- LEU- ARG: Octapeptide(Non-covalent)

LEU-ASP-ILE-PRO-ALA-PHE-LEU-ARG.1: 14 residues within 4Å: Chain C: E.5, L.8, Q.9, A.12, L.13, E.16, F.57, S.61, R.65, G.89, F.90, R.93, N.94, L.97 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:L.8, C:L.13, C:F.57, C:R.93, C:R.93, C:L.97 Hydrogen bonds: C:R.93, C:N.94, C:N.94, C:N.94 pi-Stacking: C:F.57 LEU-ASP-ILE-PRO-ALA-PHE-LEU-ARG.2: 16 residues within 4Å: Chain D: L.8, Q.9, A.12, L.54, F.57, S.61, R.65, L.68, I.69, L.82, L.85, L.86, F.90, R.93, N.94, P.95 16 PLIP interactions: 16 interactions with chain D Hydrophobic interactions: D:L.8, D:A.12, D:L.54, D:F.57, D:L.68, D:L.82, D:L.86, D:F.90, D:F.90 Hydrogen bonds: D:Q.9, D:Q.9, D:Q.9, D:R.65, D:N.94, D:N.94 Salt bridges: D:R.65 LEU-ASP-ILE-PRO-ALA-PHE-LEU-ARG.3: 10 residues within 4Å: Chain A: L.8, Q.9, A.12, L.13, F.57, R.65, G.89, R.93, N.94, L.97 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:A.12, A:F.57, A:F.57, A:R.93, A:L.97 Hydrogen bonds: A:Q.9, A:R.65, A:N.94, A:N.94 Salt bridges: A:R.65 LEU-ASP-ILE-PRO-ALA-PHE-LEU-ARG.4: 14 residues within 4Å: Chain B: E.5, L.8, Q.9, A.12, L.54, F.57, S.61, R.65, I.69, L.86, G.89, F.90, R.93, N.94 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:A.12, B:L.54, B:F.57, B:I.69, B:R.93, B:R.93 Hydrogen bonds: B:Q.9, B:Q.9, B:Q.9, B:N.94, B:N.94 Salt bridges: B:E.5 pi-Stacking: B:F.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schumacher, M.A. et al., Structures of the nucleoid occlusion protein SlmA bound to DNA and the C-terminal domain of the cytoskeletal protein FtsZ. Proc. Natl. Acad. Sci. U.S.A. (2016)

Release Date

2016-06-22

Peptides

Nucleoid occlusion factor SlmA: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
A

D
B

Nucleoid occlusion factor SlmA