- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.35 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x ACT: ACETATE ION(Non-functional Binders)
- 2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.4: 7 residues within 4Å:- Chain A: P.272, M.273, Q.276
- Chain B: P.272, M.273, Q.276
- Ligands: MPD.9
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:P.272
- Hydrogen bonds: B:Q.276, A:Q.276
- Water bridges: B:E.32
MPD.9: 7 residues within 4Å:- Chain A: P.272, M.273, Q.276
- Chain B: P.272, M.273, Q.276
- Ligands: MPD.4
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:P.272
- Hydrogen bonds: A:Q.276, B:Q.276
- Water bridges: B:E.32
- 2 x LBV: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid(Covalent)
LBV.5: 27 residues within 4Å:- Chain A: T.34, T.35, C.38, E.41, I.43, M.188, Y.190, F.212, F.217, S.220, D.221, I.222, P.223, A.226, Y.230, R.236, R.268, T.270, S.271, M.273, H.274, Y.277, S.286, L.287, S.288, L.300, H.304
30 PLIP interactions:30 interactions with chain A- Hydrophobic interactions: A:I.43, A:I.43, A:Y.190, A:F.212, A:F.217, A:F.217, A:D.221, A:I.222, A:I.222, A:P.223, A:A.226, A:Y.230, A:M.273, A:H.274, A:Y.277, A:L.300
- Hydrogen bonds: A:D.221, A:D.221, A:D.221, A:Y.230, A:S.271, A:S.286
- Water bridges: A:R.268, A:R.268, A:L.287, A:L.287, A:H.304
- Salt bridges: A:R.268, A:H.274
- pi-Stacking: A:H.274
LBV.10: 27 residues within 4Å:- Chain B: T.34, T.35, C.38, E.41, I.43, M.188, Y.190, F.212, F.217, S.220, D.221, I.222, P.223, A.226, Y.230, R.236, R.268, T.270, S.271, M.273, H.274, Y.277, S.286, L.287, S.288, L.300, H.304
32 PLIP interactions:32 interactions with chain B- Hydrophobic interactions: B:I.43, B:I.43, B:Y.190, B:F.212, B:F.217, B:F.217, B:D.221, B:I.222, B:I.222, B:P.223, B:A.226, B:Y.230, B:M.273, B:H.274, B:Y.277, B:L.300
- Hydrogen bonds: B:D.221, B:D.221, B:Y.230, B:Y.230, B:S.271, B:S.286
- Water bridges: B:R.268, B:R.268, B:H.274, B:H.274, B:L.287, B:L.287, B:H.304
- Salt bridges: B:R.268, B:H.274
- pi-Stacking: B:H.274
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Edlund, P. et al., The room temperature crystal structure of a bacterial phytochrome determined by serial femtosecond crystallography. Sci Rep (2016)
- Release Date
- 2016-10-26
- Peptides
- Bacteriophytochrome: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.35 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x ACT: ACETATE ION(Non-functional Binders)
- 2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 2 x LBV: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Edlund, P. et al., The room temperature crystal structure of a bacterial phytochrome determined by serial femtosecond crystallography. Sci Rep (2016)
- Release Date
- 2016-10-26
- Peptides
- Bacteriophytochrome: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A