SMTL ID : 5k5l.1

Homo sapiens CCCTC-binding factor (CTCF) ZnF6-8 and H19 sequence DNA complex structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.12 Å

Oligo State

homo-trimer

Ligands

7 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain E: C.40, C.43, H.56, H.61 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.40, E:C.43, E:H.56, E:H.61 ZN.2: 4 residues within 4Å: Chain E: C.70, C.73, H.86, H.90 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.70, E:C.73, E:H.86, E:H.90 ZN.3: 4 residues within 4Å: Chain F: C.40, C.43, H.56, H.61 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.40, F:C.43, F:H.56, F:H.61 ZN.4: 4 residues within 4Å: Chain F: C.70, C.73, H.86, H.90 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.70, F:C.73, F:H.86, F:H.90 ZN.5: 4 residues within 4Å: Chain G: C.40, C.43, H.56, H.61 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.40, G:C.43, G:H.56, G:H.61 ZN.6: 4 residues within 4Å: Chain G: C.70, C.73, H.86, H.90 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.70, G:C.73, G:H.86, G:H.90 ZN.7: 4 residues within 4Å: Chain G: C.10, C.13, H.26, H.31 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.10, G:C.13, G:H.26, G:H.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hashimoto, H. et al., Structural Basis for the Versatile and Methylation-Dependent Binding of CTCF to DNA. Mol. Cell (2017)

Release Date

2017-05-24

Peptides

Transcriptional repressor CTCF: EFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

E
E

F
F

G
G

Transcriptional repressor CTCF