SMTL ID : 5k5z.1 (1 other biounit)

Structure of pnob8 ParA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.37 Å

Oligo State

homo-dimer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 23 residues within 4Å: Chain A: G.12, G.13, V.14, G.15, K.16, T.17, T.18, D.40, Q.42, T.141, R.206, L.253, S.254, S.255, R.256, K.257, L.260, S.261 Chain B: K.11, G.12, T.166, E.168 Ligands: MG.2 19 PLIP interactions: 16 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:G.13, A:V.14, A:G.15, A:K.16, A:K.16, A:T.17, A:T.18, A:T.18, A:D.40, A:Q.42, A:R.206, A:S.254, A:R.256, B:G.12, B:T.166, B:E.168 Water bridges: A:R.206, A:R.206 pi-Cation interactions: A:R.206 ANP.3: 23 residues within 4Å: Chain A: K.11, G.12, T.166, E.168 Chain B: G.12, G.13, V.14, G.15, K.16, T.17, T.18, D.40, Q.42, P.143, R.206, L.253, S.254, S.255, R.256, K.257, L.260, S.261 Ligands: MG.4 24 PLIP interactions: 18 interactions with chain B, 6 interactions with chain A Hydrogen bonds: B:G.13, B:V.14, B:G.15, B:K.16, B:K.16, B:K.16, B:T.17, B:T.18, B:T.18, B:Q.42, B:T.141, B:R.206, B:R.206, B:S.254, B:R.256, A:G.12, A:T.166, A:T.166, A:E.168, A:E.168 Water bridges: B:S.44, B:S.44, A:K.11 pi-Cation interactions: B:R.206

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: T.17, D.40, D.140, T.141 Ligands: ANP.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.40, A:D.140 MG.4: 5 residues within 4Å: Chain B: T.17, D.40, D.140, T.141 Ligands: ANP.3 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:T.17, B:D.40, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schumacher, M.A. et al., Structures of archaeal DNA segregation machinery reveal bacterial and eukaryotic linkages. Science (2015)

Release Date

2016-06-22

Peptides

ParA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

ParA

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