SMTL ID : 5k60.1

Crystal structure of N-terminal amidase with Gln-Val peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x GLN: GLUTAMINE(Non-covalent)

GLN.1: 12 residues within 4Å: Chain A: E.65, Y.71, K.138, Y.142, S.189, M.190, S.193, F.197, A.223, W.224, L.225 Ligands: VAL.2 11 PLIP interactions: 10 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:Y.142, A:Y.142 Hydrogen bonds: A:E.65, A:K.138, A:S.189, A:M.190, A:S.193, A:S.193, A:A.223, A:L.225, V.2

1 x VAL: VALINE(Non-covalent)

VAL.2: 4 residues within 4Å: Chain A: Y.142, F.197, W.224 Ligands: GLN.1 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:F.197 Hydrogen bonds: Q.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, M.K. et al., Structural basis for dual specificity of yeast N-terminal amidase in the N-end rule pathway. Proc. Natl. Acad. Sci. U.S.A. (2016)

Release Date

2017-01-11

Peptides

Nta1p: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nta1p

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