SMTL ID : 5k65.1

Crystal structure of VEGF binding IgG1-Fc (Fcab CT6)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG- BMA- MAN- NAG- MAN- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-MAN-FUC.1: 13 residues within 4Å: Chain A: F.17, F.19, K.22, T.36, V.38, V.40, D.41, Q.71, Y.72, N.73, T.75, R.77 Ligands: NAG-NAG-BMA-MAN-MAN.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.22, A:R.77

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.2: 10 residues within 4Å: Chain B: F.17, F.19, V.38, V.40, D.41, Q.71, N.73, T.75, R.77 Ligands: NAG-NAG-BMA-MAN-NAG-MAN-FUC.1 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lobner, E. et al., Two-faced Fcab prevents polymerization with VEGF and reveals thermodynamics and the 2.15 angstrom crystal structure of the complex. MAbs (2017)

Release Date

2017-09-06

Peptides

Ig gamma-1 chain C region: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ig gamma-1 chain C region