SMTL ID : 5k67.1

Designed Artificial Cupredoxins

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

4 x SI4: [CuII(biot-pr-dpea)]2+(Non-covalent)

SI4.1: 25 residues within 4Å: Chain A: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, A.50, W.79, A.86, S.88, T.90, W.92, W.108, L.110, C.112, T.114, K.121, S.122, L.124, D.128 Chain C: W.120, L.124 Ligands: SI4.5 18 PLIP interactions: 16 interactions with chain A, 2 interactions with chain C, Hydrophobic interactions: A:A.50, A:W.79, A:W.79, A:W.79, A:L.110, A:T.114, A:L.124, C:W.120, C:L.124 Hydrogen bonds: A:N.23, A:S.27, A:Y.43, A:S.45, A:N.49, A:S.88, A:S.88, A:D.128 Metal complexes: A:C.112 SI4.3: 25 residues within 4Å: Chain B: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, A.50, W.79, A.86, S.88, T.90, W.92, W.108, L.110, C.112, T.114, K.121, S.122, L.124, D.128 Chain D: W.120, L.124 Ligands: SI4.7 17 PLIP interactions: 15 interactions with chain B, 2 interactions with chain D, Hydrophobic interactions: B:A.50, B:W.79, B:W.79, B:W.79, B:L.110, B:T.114, B:L.124, D:W.120, D:L.124 Hydrogen bonds: B:N.23, B:S.27, B:S.45, B:N.49, B:S.88, B:S.88, B:D.128 Metal complexes: B:C.112 SI4.5: 25 residues within 4Å: Chain A: W.120, L.124 Chain C: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, A.50, W.79, A.86, S.88, T.90, W.92, W.108, L.110, C.112, T.114, K.121, S.122, L.124, D.128 Ligands: SI4.1 18 PLIP interactions: 2 interactions with chain A, 16 interactions with chain C, Hydrophobic interactions: A:W.120, A:L.124, C:A.50, C:W.79, C:W.79, C:W.79, C:L.110, C:T.114, C:L.124 Hydrogen bonds: C:N.23, C:S.27, C:Y.43, C:S.45, C:N.49, C:S.88, C:S.88, C:D.128 Metal complexes: C:C.112 SI4.7: 25 residues within 4Å: Chain B: W.120, L.124 Chain D: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, A.50, W.79, A.86, S.88, T.90, W.92, W.108, L.110, C.112, T.114, K.121, S.122, L.124, D.128 Ligands: SI4.3 17 PLIP interactions: 15 interactions with chain D, 2 interactions with chain B, Hydrophobic interactions: D:A.50, D:W.79, D:W.79, D:W.79, D:L.110, D:T.114, D:L.124, B:W.120, B:L.124 Hydrogen bonds: D:N.23, D:S.27, D:S.45, D:N.49, D:S.88, D:S.88, D:D.128 Metal complexes: D:C.112

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: V.47, G.48 Chain C: A.117, N.118, W.120, K.121 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:G.48, C:W.120 GOL.4: 6 residues within 4Å: Chain B: V.47, G.48 Chain D: A.117, N.118, W.120, K.121 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:G.48, D:W.120 GOL.6: 6 residues within 4Å: Chain A: A.117, N.118, W.120, K.121 Chain C: V.47, G.48 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:W.120, C:G.48 GOL.8: 6 residues within 4Å: Chain B: A.117, N.118, W.120, K.121 Chain D: V.47, G.48 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:G.48, B:W.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mann, S.I. et al., Modular Artificial Cupredoxins. J.Am.Chem.Soc. (2016)

Release Date

2016-07-20

Peptides

Streptavidin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Streptavidin

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