SMTL ID : 5k6k.1 (2 other biounits)

Zika virus non-structural protein 1 (NS1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

homo-dimer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.154 No protein-ligand interaction detected (PLIP) NAG.2: 4 residues within 4Å: Chain A: R.215, N.231, D.232, R.235 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.215, A:R.235, A:R.235 Water bridges: A:N.231, A:R.281 NAG.4: 1 residues within 4Å: Chain B: N.154 1 PLIP interactions: 1 interactions with chain B Water bridges: B:N.154 NAG.5: 2 residues within 4Å: Chain B: N.231, R.235 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.235, B:R.235 Water bridges: B:R.281

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: R.285, R.318 8 PLIP interactions: 8 interactions with chain A Water bridges: A:R.285, A:R.285, A:R.285, A:R.318, A:R.318, A:R.318 Salt bridges: A:R.285, A:R.318 SO4.6: 3 residues within 4Å: Chain B: P.365, E.366, S.367 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.366, B:S.367 Water bridges: B:S.367 SO4.7: 3 residues within 4Å: Chain B: T.326, S.328, R.330 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.326, B:S.328, B:S.328 Water bridges: B:T.326, B:A.327 Salt bridges: B:R.330 SO4.8: 2 residues within 4Å: Chain B: R.285, R.318 5 PLIP interactions: 5 interactions with chain B Water bridges: B:R.285, B:R.318, B:R.318 Salt bridges: B:R.285, B:R.318 SO4.9: 4 residues within 4Å: Chain B: R.285, T.317, R.318, R.338 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.317, B:R.318 Salt bridges: B:R.285, B:R.338

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 4 residues within 4Å: Chain B: E.76, G.77, Q.126, H.171 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.171, B:H.171 Water bridges: B:Q.126, B:Q.126 GOL.11: 2 residues within 4Å: Chain B: K.289, T.375 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.289, B:T.375, B:T.375 GOL.12: 5 residues within 4Å: Chain B: G.115, S.116, G.161, D.162, T.163 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.116, B:D.162 Water bridges: B:D.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brown, W.C. et al., Extended surface for membrane association in Zika virus NS1 structure. Nat.Struct.Mol.Biol. (2016)

Release Date

2016-07-06

Peptides

Zika virus protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Zika virus protein

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