SMTL ID : 5k6y.1 (2 other biounits)

Sidekick-2 immunoglobulin domains 1-4, crystal form 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 3 residues within 4Å: Chain A: N.208, Y.286, S.288 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.286 Hydrogen bonds: A:S.288 NAG-NAG-FUC.3: 3 residues within 4Å: Chain B: N.208, Y.286, S.288 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Y.286 Hydrogen bonds: B:S.288

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 3 residues within 4Å: Chain A: Q.169, N.178 Chain B: Y.59 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goodman, K.M. et al., Molecular basis of sidekick-mediated cell-cell adhesion and specificity. Elife (2016)

Release Date

2016-09-28

Peptides

Protein sidekick-2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein sidekick-2

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