SMTL ID : 5k6z.1

Sidekick chimera containing sidekick-2 immunoglobulin domains 1-2 and sidekick-1 immunoglobulin domains 3-4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain B: N.208, F.286 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:F.286

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: N.208, F.286 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.208 NAG.3: 3 residues within 4Å: Chain A: N.178 Chain B: Y.59, R.60 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:Y.59 Hydrogen bonds: A:N.178

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 7 residues within 4Å: Chain A: M.34, A.35, E.36, Y.59 Chain B: Q.129, T.131, Q.169 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.59 Hydrogen bonds: A:C.33, A:A.35 MPD.6: 11 residues within 4Å: Chain A: Q.129, V.130, T.131, Q.169, V.171 Chain B: K.14, C.33, M.34, A.35, F.43, Y.59 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:V.171, B:F.43, B:Y.59 Hydrogen bonds: B:C.33, B:A.35

1 x CAC: CACODYLATE ION(Non-covalent)

CAC.5: 4 residues within 4Å: Chain A: Q.21, V.22 Chain B: Q.21, V.22 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:V.22, B:V.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goodman, K.M. et al., Molecular basis of sidekick-mediated cell-cell adhesion and specificity. Elife (2016)

Release Date

2016-09-28

Peptides

Protein sidekick-2,Protein sidekick-1 chimera: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein sidekick-2,Protein sidekick-1 chimera