SMTL ID : 5k7y.1

Crystal structure of enzyme in purine metabolism

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

homo-tetramer

Ligands

28 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: K.381, R.475, Y.476 Chain C: A.133, Y.134, R.163, R.475 Ligand excluded by PLIP GOL.2: 7 residues within 4Å: Chain A: D.271, Y.272, V.307, D.308, G.329, K.330, L.331 Ligand excluded by PLIP GOL.3: 8 residues within 4Å: Chain A: F.302, D.303, I.305, L.340, Q.341, H.342, G.343, I.344 Ligand excluded by PLIP GOL.4: 6 residues within 4Å: Chain A: T.116, E.393, E.397, Y.453, G.457, L.459 Ligand excluded by PLIP GOL.5: 7 residues within 4Å: Chain A: M.62, L.254, R.257, L.487, L.488, Y.490, F.492 Ligand excluded by PLIP GOL.6: 6 residues within 4Å: Chain A: D.73, H.228, Y.229, L.233, K.234, Y.274 Ligand excluded by PLIP GOL.7: 6 residues within 4Å: Chain A: F.89, E.90, V.93, E.94, L.106, F.108 Ligand excluded by PLIP GOL.8: 7 residues within 4Å: Chain B: K.381, R.475, Y.476 Chain D: A.133, Y.134, R.163, R.475 Ligand excluded by PLIP GOL.9: 7 residues within 4Å: Chain B: D.271, Y.272, V.307, D.308, G.329, K.330, L.331 Ligand excluded by PLIP GOL.10: 8 residues within 4Å: Chain B: F.302, D.303, I.305, L.340, Q.341, H.342, G.343, I.344 Ligand excluded by PLIP GOL.11: 6 residues within 4Å: Chain B: T.116, E.393, E.397, Y.453, G.457, L.459 Ligand excluded by PLIP GOL.12: 7 residues within 4Å: Chain B: M.62, L.254, R.257, L.487, L.488, Y.490, F.492 Ligand excluded by PLIP GOL.13: 6 residues within 4Å: Chain B: D.73, H.228, Y.229, L.233, K.234, Y.274 Ligand excluded by PLIP GOL.14: 6 residues within 4Å: Chain B: F.89, E.90, V.93, E.94, L.106, F.108 Ligand excluded by PLIP GOL.15: 7 residues within 4Å: Chain A: A.133, Y.134, R.163, R.475 Chain C: K.381, R.475, Y.476 Ligand excluded by PLIP GOL.16: 7 residues within 4Å: Chain C: D.271, Y.272, V.307, D.308, G.329, K.330, L.331 Ligand excluded by PLIP GOL.17: 8 residues within 4Å: Chain C: F.302, D.303, I.305, L.340, Q.341, H.342, G.343, I.344 Ligand excluded by PLIP GOL.18: 6 residues within 4Å: Chain C: T.116, E.393, E.397, Y.453, G.457, L.459 Ligand excluded by PLIP GOL.19: 7 residues within 4Å: Chain C: M.62, L.254, R.257, L.487, L.488, Y.490, F.492 Ligand excluded by PLIP GOL.20: 6 residues within 4Å: Chain C: D.73, H.228, Y.229, L.233, K.234, Y.274 Ligand excluded by PLIP GOL.21: 6 residues within 4Å: Chain C: F.89, E.90, V.93, E.94, L.106, F.108 Ligand excluded by PLIP GOL.22: 7 residues within 4Å: Chain B: A.133, Y.134, R.163, R.475 Chain D: K.381, R.475, Y.476 Ligand excluded by PLIP GOL.23: 7 residues within 4Å: Chain D: D.271, Y.272, V.307, D.308, G.329, K.330, L.331 Ligand excluded by PLIP GOL.24: 8 residues within 4Å: Chain D: F.302, D.303, I.305, L.340, Q.341, H.342, G.343, I.344 Ligand excluded by PLIP GOL.25: 6 residues within 4Å: Chain D: T.116, E.393, E.397, Y.453, G.457, L.459 Ligand excluded by PLIP GOL.26: 7 residues within 4Å: Chain D: M.62, L.254, R.257, L.487, L.488, Y.490, F.492 Ligand excluded by PLIP GOL.27: 6 residues within 4Å: Chain D: D.73, H.228, Y.229, L.233, K.234, Y.274 Ligand excluded by PLIP GOL.28: 6 residues within 4Å: Chain D: F.89, E.90, V.93, E.94, L.106, F.108 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hnizda, A. et al., Oligomeric interface modulation causes misregulation of purine 5 -nucleotidase in relapsed leukemia. Bmc Biol. (2016)

Release Date

2016-09-21

Peptides

Cytosolic purine 5'-nucleotidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Cytosolic purine 5'-nucleotidase