SMTL ID : 5k8d.1

Crystal structure of rFVIIIFc

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.19 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 4 residues within 4Å: Chain A: V.44, N.239, Q.316, H.317 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 1 residues within 4Å: Chain B: N.117 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-beta-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-BMA-MAN-MAN-MAN.3: 7 residues within 4Å: Chain B: H.174, V.178, Q.181, Q.245, Y.324, N.425, N.448 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.245

3 x CA: CALCIUM ION(Non-covalent)

CA.4: 6 residues within 4Å: Chain A: A.112, D.116, T.118, E.122, K.123, D.126 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.116, A:D.126 CA.5: 9 residues within 4Å: Chain A: S.535, F.536, V.537, N.538, M.539, E.540, R.541, D.542, L.543 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.535 CA.6: 5 residues within 4Å: Chain A: K.107, A.108, E.122, D.125, D.126 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:K.107, A:A.108, A:D.126

2 x CU: COPPER (II) ION(Non-covalent)

CU.7: 4 residues within 4Å: Chain A: H.232, H.267, C.310, H.315 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.267, A:H.267, A:C.310, A:H.315 CU.8: 5 residues within 4Å: Chain B: H.261, C.307, I.309, H.312, M.317 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.261, B:C.307, B:H.312

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leksa, N.C. et al., The structural basis for the functional comparability of factor VIII and the long-acting variant recombinant factor VIII Fc fusion protein. J. Thromb. Haemost. (2017)

Release Date

2017-06-14

Peptides

Coagulation factor VIII: A
Coagulation factor VIII,Ig gamma-1 chain C region: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Coagulation factor VIII

Coagulation factor VIII,Ig gamma-1 chain C region