SMTL ID : 5k8n.1

5NAA-bound 5-nitroanthranilate aminohydrolase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.23 Å

Oligo State

homo-octamer

Ligands

8 x 6R6: 5-nitroanthranilic acid(Non-covalent)

6R6.1: 12 residues within 4Å: Chain A: I.90, N.124, E.158, D.160, E.196, W.372, R.373, A.394, G.395 Chain G: Y.223, Y.288, R.289 5 PLIP interactions: 1 interactions with chain G, 4 interactions with chain A pi-Stacking: G:Y.223 Hydrogen bonds: A:E.158, A:E.196, A:A.394 Salt bridges: A:R.373 6R6.2: 12 residues within 4Å: Chain B: I.90, N.124, E.158, D.160, E.196, W.372, R.373, A.394, G.395 Chain D: Y.223, Y.288, R.289 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain D Hydrogen bonds: B:E.196, B:E.196, B:A.394, B:A.394, B:G.395 Salt bridges: B:R.373 Hydrophobic interactions: D:Y.223, D:Y.223 6R6.3: 12 residues within 4Å: Chain C: I.90, N.124, E.158, D.160, E.196, W.372, R.373, A.394, G.395 Chain H: Y.223, Y.288, R.289 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain H Hydrogen bonds: C:E.196, C:R.373, C:A.394, C:G.395 Salt bridges: C:R.373 pi-Stacking: H:Y.223 6R6.4: 12 residues within 4Å: Chain B: Y.223, Y.288, R.289 Chain D: I.90, N.124, E.158, D.160, E.196, W.372, R.373, A.394, G.395 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:E.158, D:A.394, D:G.395 Salt bridges: D:R.373 pi-Stacking: B:Y.223 6R6.5: 13 residues within 4Å: Chain E: I.90, N.124, E.158, D.160, E.196, M.371, W.372, R.373, A.394, G.395 Chain F: Y.223, Y.288, R.289 5 PLIP interactions: 4 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:E.158, E:A.394, E:G.395 Salt bridges: E:R.373 pi-Stacking: F:Y.223 6R6.6: 12 residues within 4Å: Chain E: Y.223, Y.288, R.289 Chain F: I.90, N.124, E.158, E.196, M.371, W.372, R.373, A.394, G.395 7 PLIP interactions: 6 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:E.158, F:E.196, F:R.373, F:A.394, F:G.395 Salt bridges: F:R.373 pi-Stacking: E:Y.223 6R6.7: 12 residues within 4Å: Chain A: Y.223, Y.288, R.289 Chain G: I.90, N.124, E.158, D.160, E.196, W.372, R.373, A.394, G.395 7 PLIP interactions: 1 interactions with chain A, 6 interactions with chain G pi-Stacking: A:Y.223 Hydrogen bonds: G:E.196, G:E.196, G:R.373, G:A.394, G:G.395 Salt bridges: G:R.373 6R6.8: 12 residues within 4Å: Chain C: Y.223, Y.288, R.289 Chain H: I.90, N.124, E.158, D.160, E.196, W.372, R.373, A.394, G.395 5 PLIP interactions: 4 interactions with chain H, 1 interactions with chain C Hydrogen bonds: H:E.196, H:R.373, H:A.394 Salt bridges: H:R.373 pi-Stacking: C:Y.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kalyoncu, S. et al., Enzymatic hydrolysis by transition-metal-dependent nucleophilic aromatic substitution. Nat.Chem.Biol. (2016)

Release Date

2016-10-05

Peptides

5-nitroanthranilic acid aminohydrolase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

5-nitroanthranilic acid aminohydrolase

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