SMTL ID : 5k8o.1

Mn2+/5NSA-bound 5-nitroanthranilate aminohydrolase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.89 Å

Oligo State

homo-octamer

Ligands

8 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: H.86, N.124, E.158, E.196 Ligands: 6R7.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.86, A:E.196, A:E.196 MN.3: 5 residues within 4Å: Chain B: H.86, N.124, E.158, E.196 Ligands: 6R7.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.86, B:E.196, B:E.196 MN.5: 5 residues within 4Å: Chain C: H.86, N.124, E.158, E.196 Ligands: 6R7.6 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.86, C:E.196, C:E.196 MN.7: 5 residues within 4Å: Chain D: H.86, N.124, E.158, E.196 Ligands: 6R7.8 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.86, D:E.196, D:E.196 MN.9: 5 residues within 4Å: Chain E: H.86, N.124, E.158, E.196 Ligands: 6R7.10 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:H.86, E:E.196, E:E.196 MN.11: 5 residues within 4Å: Chain F: H.86, N.124, E.158, E.196 Ligands: 6R7.12 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:H.86, F:E.196, F:E.196 MN.13: 5 residues within 4Å: Chain G: H.86, N.124, E.158, E.196 Ligands: 6R7.14 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:H.86, G:E.196, G:E.196 MN.15: 5 residues within 4Å: Chain H: H.86, N.124, E.158, E.196 Ligands: 6R7.16 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:H.86, H:E.196, H:E.196

8 x 6R7: 5-nitrosalicylic acid(Non-covalent)

6R7.2: 14 residues within 4Å: Chain A: H.86, I.90, N.124, E.158, I.159, E.196, M.371, R.373, A.394, G.395 Chain H: Y.223, Y.288, R.289 Ligands: MN.1 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain H Hydrophobic interactions: A:I.159, H:Y.223 Hydrogen bonds: A:N.124, A:A.394, A:G.395 Salt bridges: A:R.373 6R7.4: 13 residues within 4Å: Chain B: H.86, I.90, N.124, E.158, E.196, M.371, R.373, A.394, G.395 Chain E: Y.223, Y.288, R.289 Ligands: MN.3 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain E Hydrogen bonds: B:E.196, B:A.394, B:G.395 Salt bridges: B:R.373 Hydrophobic interactions: E:Y.223, E:Y.223 6R7.6: 15 residues within 4Å: Chain C: H.86, I.90, N.124, E.158, I.159, E.196, M.371, W.372, R.373, A.394, G.395 Chain D: Y.223, Y.288, R.289 Ligands: MN.5 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:I.159 Hydrogen bonds: C:A.394 Salt bridges: C:R.373 pi-Stacking: D:Y.223 6R7.8: 14 residues within 4Å: Chain C: Y.223, Y.288, R.289 Chain D: H.86, I.90, N.124, E.158, I.159, E.196, M.371, R.373, A.394, G.395 Ligands: MN.7 6 PLIP interactions: 5 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:I.159 Hydrogen bonds: D:N.124, D:A.394, D:A.394 Salt bridges: D:R.373 pi-Stacking: C:Y.223 6R7.10: 14 residues within 4Å: Chain B: Y.223, Y.288, R.289 Chain E: H.86, I.90, N.124, E.158, E.196, M.371, R.373, G.393, A.394, G.395 Ligands: MN.9 6 PLIP interactions: 5 interactions with chain E, 1 interactions with chain B Hydrogen bonds: E:N.124, E:A.394, E:A.394, E:G.395 Salt bridges: E:R.373 pi-Stacking: B:Y.223 6R7.12: 14 residues within 4Å: Chain F: H.86, I.90, N.124, E.158, I.159, E.196, M.371, R.373, A.394, G.395 Chain G: Y.223, Y.288, R.289 Ligands: MN.11 5 PLIP interactions: 1 interactions with chain G, 4 interactions with chain F pi-Stacking: G:Y.223 Hydrophobic interactions: F:I.159 Hydrogen bonds: F:N.124, F:A.394 Salt bridges: F:R.373 6R7.14: 15 residues within 4Å: Chain F: Y.223, Y.288, R.289 Chain G: H.86, I.90, N.124, E.158, I.159, D.160, E.196, M.371, R.373, A.394, G.395 Ligands: MN.13 5 PLIP interactions: 4 interactions with chain G, 1 interactions with chain F Hydrophobic interactions: G:I.159 Hydrogen bonds: G:A.394, G:A.394 Salt bridges: G:R.373 pi-Stacking: F:Y.223 6R7.16: 14 residues within 4Å: Chain A: Y.223, Y.288, R.289 Chain H: H.86, I.90, N.124, E.158, I.159, E.196, M.371, R.373, A.394, G.395 Ligands: MN.15 7 PLIP interactions: 6 interactions with chain H, 1 interactions with chain A Hydrophobic interactions: H:I.159 Hydrogen bonds: H:E.196, H:R.373, H:A.394, H:G.395 Salt bridges: H:R.373 pi-Stacking: A:Y.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kalyoncu, S. et al., Enzymatic hydrolysis by transition-metal-dependent nucleophilic aromatic substitution. Nat.Chem.Biol. (2016)

Release Date

2016-10-05

Peptides

5-nitroanthranilic acid aminohydrolase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

5-nitroanthranilic acid aminohydrolase

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