SMTL ID : 5k9k.2 (1 other biounit)

Crystal structure of multidonor HV6-1-class broadly neutralizing Influenza A antibody 56.a.09 in complex with Hemagglutinin Hong Kong 1968.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.97 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.1: 2 residues within 4Å: Chain C: P.21, N.22 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.5: 3 residues within 4Å: Chain C: S.45, N.285, V.297 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-4)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN.2: 13 residues within 4Å: Chain A: Q.1, V.2, G.26, D.27, R.33, M.105, I.106, F.107, G.108 Chain B: T.57 Chain C: T.24, N.38, A.39 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.1, A:G.26, A:R.33, A:R.33

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.3: 3 residues within 4Å: Chain C: N.81, F.120, R.150 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.4: 4 residues within 4Å: Chain B: Q.27 Chain C: A.476, E.479, N.483 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 3 residues within 4Å: Chain C: P.4, N.8, S.358 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.8 NAG.7: 2 residues within 4Å: Chain C: N.165, T.167 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joyce, M.G. et al., Vaccine-Induced Antibodies that Neutralize Group 1 and Group 2 Influenza A Viruses. Cell (2016)

Release Date

2016-12-21

Peptides

56.a.09 Heavy chain: A
56.a.09 Light chain: B
Hemagglutinin: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
F

56.a.09 Heavy chain

56.a.09 Light chain

Hemagglutinin

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