SMTL ID : 5ka3.1 (1 other biounit)

Protein Tyrosine Phosphatase 1B YAYA (Y152A, Y153A) mutant in complex with TCS401, closed state

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

monomer

Ligands

1 x OTA: 2-(OXALYL-AMINO)-4,5,6,7-TETRAHYDRO-THIENO[2,3-C]PYRIDINE-3-CARBOXYLIC ACID(Non-covalent)

OTA.1: 13 residues within 4Å: Chain A: Y.51, D.53, V.54, K.125, D.186, F.187, C.220, S.221, A.222, I.224, G.225, R.226, Q.267 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:Y.51, A:F.187 Hydrogen bonds: A:D.53, A:D.186, A:D.186, A:S.221, A:S.221, A:A.222, A:I.224, A:G.225, A:R.226 Water bridges: A:D.186, A:Q.271 Salt bridges: A:K.125, A:R.226 pi-Stacking: A:Y.51

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 1 residues within 4Å: Chain A: H.59 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.59 TRS.3: 3 residues within 4Å: Chain A: K.146, E.164, E.166 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.146, A:K.146, A:E.164, A:E.166

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: R.117, V.118, H.180 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: M.119, K.121, G.122 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: P.36, C.37, R.38 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain A: R.50, P.94, C.126, A.127 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 5 residues within 4Å: Chain A: P.94, C.97, Q.128, M.138, F.140 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.128 Water bridges: A:G.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choy, M.S. et al., Conformational Rigidity and Protein Dynamics at Distinct Timescales Regulate PTP1B Activity and Allostery. Mol. Cell (2017)

Release Date

2017-03-08

Peptides

Tyrosine-protein phosphatase non-receptor type 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein phosphatase non-receptor type 1

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