SMTL ID : 5kb6.1 (1 other biounit)

High-resolution structure of the adenosine kinase from Mus musculus in complex with adenosine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

1 x ADN: ADENOSINE(Non-covalent)

ADN.1: 18 residues within 4Å: Chain A: T.283, Q.284, G.285, R.286, T.289, V.302, D.304, Q.305, Q.307, I.310, T.313, A.316, G.317, F.320, H.342, A.345, I.349 Ligands: ACT.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.307, A:Q.307 Water bridges: A:Q.284, A:G.285, A:S.346

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 8 residues within 4Å: Chain A: Y.78, H.79, A.80, K.89, K.120, A.124, T.355, F.356 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:A.80 Water bridges: A:K.120, A:K.120, A:K.120, A:K.120 Salt bridges: A:H.79, A:K.89

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 6 residues within 4Å: Chain A: G.31, N.32, S.83, T.84, A.186, F.188 Ligand excluded by PLIP

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.4: 7 residues within 4Å: Chain A: L.303, D.304, Y.343, S.346, V.347, R.350, D.361 3 PLIP interactions: 3 interactions with chain A Water bridges: A:S.346, A:S.346, A:R.350 PG4.5: 6 residues within 4Å: Chain A: G.253, F.254, E.255, K.265, A.268, L.269 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.265

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 7 residues within 4Å: Chain A: T.313, N.314, G.315, A.316, G.317, D.318 Ligands: ADN.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.315, A:A.316, A:G.317, A:D.318

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oliveira, R.R. et al., High-resolution structure of the adenosine kinase from Mus musculus in complex with adenosine. To Be Published

Release Date

2017-06-07

Peptides

Adenosine kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Adenosine kinase

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