SMTL ID : 5kcm.1 (1 other biounit)

Crystal structure of iron-sulfur cluster containing photolyase PhrB mutant I51W

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 29 residues within 4Å: Chain A: F.249, H.265, S.266, L.267, L.268, S.269, I.272, N.273, F.303, Q.306, I.307, W.310, R.311, M.314, Y.363, A.364, H.365, H.366, R.369, L.370, Y.391, D.397, A.398, Y.399, V.402, E.403, N.406, V.407, M.410 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:R.369, A:L.370, A:Y.391, A:Y.391, A:N.406, A:V.407 Hydrogen bonds: A:S.266, A:S.266, A:S.266, A:L.267, A:L.268, A:S.269, A:S.269, A:N.273, A:H.366, A:R.369, A:R.369, A:D.397, A:D.397, A:Y.399, A:N.406, A:N.406 Water bridges: A:R.311, A:H.366 Salt bridges: A:H.265 pi-Cation interactions: A:R.369, A:R.369

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.2: 8 residues within 4Å: Chain A: M.348, N.349, C.350, I.431, Y.437, C.438, C.441, C.454 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.350, A:C.438, A:C.441, A:C.454

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: A.321, Y.325, D.415, F.418 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.321

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, F. et al., Crystal Structures of Bacterial (6-4) Photolyase Mutants with Impaired DNA Repair Activity. Photochem. Photobiol. (2017)

Release Date

2017-01-11

Peptides

(6-4) photolyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

(6-4) photolyase

Related Entries With Identical Sequence