SMTL ID : 5kd6.1

Crystal structure of the aromatic prenyltransferase AtaPT from Aspergillus terreus A8-4 in complex with dimethylallyl S-thiolodiphosphate and (-)-butyrolactone II

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-tetramer

Ligands

4 x DST: DIMETHYLALLYL S-THIOLODIPHOSPHATE(Non-covalent)

DST.1: 13 residues within 4Å: Chain A: E.86, K.90, R.99, K.183, Y.185, R.259, K.261, Y.263, N.323, Q.337, Y.339, N.406, Y.408 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:R.99, A:K.261, A:Q.337, A:N.406, A:Y.408 Water bridges: A:R.259, A:N.323, A:Y.339 Salt bridges: A:K.90, A:R.99, A:K.183, A:R.259, A:K.261 DST.3: 10 residues within 4Å: Chain B: K.90, R.99, K.183, Y.185, R.259, N.323, Q.337, Y.339, N.406, Y.408 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:Y.339 Hydrogen bonds: B:R.99, B:K.183, B:K.183, B:Y.185, B:Q.337, B:Y.339, B:N.406 Water bridges: B:S.172 Salt bridges: B:K.90, B:R.99, B:K.183, B:R.259 DST.4: 13 residues within 4Å: Chain C: E.86, K.90, R.99, K.183, Y.185, R.259, K.261, Y.263, N.323, Q.337, Y.339, N.406, Y.408 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:R.99, C:K.261, C:Q.337, C:N.406, C:Y.408 Water bridges: C:R.259, C:N.323, C:Y.339 Salt bridges: C:K.90, C:R.99, C:K.183, C:R.259, C:K.261 DST.6: 10 residues within 4Å: Chain D: K.90, R.99, K.183, Y.185, R.259, N.323, Q.337, Y.339, N.406, Y.408 13 PLIP interactions: 13 interactions with chain D Hydrophobic interactions: D:Y.339 Hydrogen bonds: D:R.99, D:K.183, D:K.183, D:Y.185, D:Q.337, D:Y.339, D:N.406 Water bridges: D:S.172 Salt bridges: D:K.90, D:R.99, D:K.183, D:R.259

2 x LBU: methyl (2S)-4-hydroxy-3-(4-hydroxyphenyl)-2-[(4-hydroxyphenyl)methyl]-5-oxo-2,5-dihydrofuran-2-carboxylate(Non-covalent)

LBU.2: 12 residues within 4Å: Chain B: G.77, L.78, S.165, N.167, V.169, C.170, Y.263, F.267, L.318, P.319, R.391, W.392 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.318 Hydrogen bonds: B:V.169 Water bridges: B:N.167 Salt bridges: B:R.391 LBU.5: 12 residues within 4Å: Chain D: G.77, L.78, S.165, N.167, V.169, C.170, Y.263, F.267, L.318, P.319, R.391, W.392 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:L.318 Hydrogen bonds: D:V.169 Water bridges: D:N.167 Salt bridges: D:R.391

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, R. et al., Molecular insights into the enzyme promiscuity of an aromatic prenyltransferase. Nat. Chem. Biol. (2017)

Release Date

2016-12-21

Peptides

aromatic prenyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

aromatic prenyltransferase

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