SMTL ID : 5kdi.2 (1 other biounit)

How FAPP2 Selects Simple Glycosphingolipids Using the GLTP-fold

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x 6S8: (~{Z})-~{N}-[(~{E},2~{S},3~{R})-1-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-octadec-4-en-2-yl]octadec-9-enamide(Non-covalent)

6S8.1: 23 residues within 4Å: Chain A: V.34, V.37, L.38, L.41, V.45, F.46, P.48, V.49, D.52, N.56, K.59, E.95, W.99, G.103, F.106, L.107, F.110, L.133, H.137, V.144, F.145, A.148, V.211 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:V.34, A:V.37, A:L.38, A:L.41, A:V.45, A:F.46, A:F.46, A:V.49, A:W.99, A:F.106, A:F.106, A:L.107, A:F.110, A:L.133, A:V.144, A:F.145, A:A.148 Hydrogen bonds: A:D.52, A:D.52, A:N.56, A:N.56, A:K.59, A:K.59 Water bridges: A:E.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ochoa-Lizarralde, B. et al., Structural analyses of 4-phosphate adaptor protein 2 yield mechanistic insights into sphingolipid recognition by the glycolipid transfer protein family. J.Biol.Chem. (2018)

Release Date

2017-12-13

Peptides

Pleckstrin homology domain-containing family A member 8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Pleckstrin homology domain-containing family A member 8

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